RetrogeneDB ID: | retro_ocun_218 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 16:25468401..25469697(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000017468 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BECN1 | ||
Ensembl ID: | ENSOCUG00000015964 | ||
Aliases: | None | ||
Description: | beclin 1, autophagy related [Source:HGNC Symbol;Acc:1034] |
Percent Identity: | 51.57 % |
Parental protein coverage: | 87.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LLATAQVKPGDPQEEEANSGEEAFIETRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRL |
.LA..Q...G..QE....S......E..Q.G.S....P.....S.E....FTL.G.....GT...L.... | |
Retrocopy | MLASTQGEQGESQETGTSSEKMRGSEKLQVGASGGALPEDSNTS-EDSGGFTLLGDVCSVGTLSSLQ--- |
Parental | KVTGDLFDIMSGQTDVDHPLCEECTDTLLDQLDTQLHVTENECQNYKRCLEILEQMNEDDSEQLQKELRE |
..T...FDI.SGQ.DV.HPLCEECTD.LL.QLD.QL...E...QNYKRCLE..E...E...E.LQ.ELR. | |
Retrocopy | EATVQIFDILSGQKDVEHPLCEECTDNLLEQLDSQLTLVELDTQNYKRCLESGELQVEPETESLQAELRA |
Parental | LALEEERLVQELEDVEKNRRTVAESLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY |
L.LEE.RL..ELEDV.K....VA..L....AE...L.Q.E.Q..REYS..K.QQLEL.D.L.S.ENQ..Y | |
Retrocopy | LELEEARLARELEDVDKGCARVAAALQEAEAETQELEQRERQSHREYSALKWQQLELCDQLGSIENQLWY |
Parental | AQMQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKMGLKFQ |
AQ.QL..L.KT..F..TF.I...G..G.INN.RLG.LP..PV.WNEINAAWGQ..LLL.AL.N..GL.FQ | |
Retrocopy | AQAQLHWLNKTSIFQVTFEIREEGSVGIINNLRLGCLPIGPVDWNEINAAWGQVALLLLALSNTIGLEFQ |
Parental | RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGETRFCLPYRM |
RY.L.P...HSYL..LT..S..LPL...G....F..NKFD.AM.AFLDC.QQFKE..EKG.....LPYR. | |
Retrocopy | RYQLIPCADHSYLKPLTGNSALLPLFSDGSQNVFLSNKFDRAMIAFLDCLQQFKEKAEKGKQGLRLPYRI |
Parental | DVEKGKIEDTGGSGGSYSIKTQFNSEEQWTKA |
.VE.G..ED..GSG.........N..EQWT.A | |
Retrocopy | RVEEGLLEDSTGSGECCALRSHLNTREQWTRA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .65 RPM |
SRP017611_kidney | 0 .00 RPM | 49 .77 RPM |
SRP017611_liver | 0 .00 RPM | 24 .12 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006867 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019914 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000000956 | 1 retrocopy | |
Felis catus | ENSFCAG00000013136 | 1 retrocopy | |
Homo sapiens | ENSG00000126581 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011700 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029971 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015064 | 1 retrocopy | |
Mus musculus | ENSMUSG00000035086 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011840 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015964 | 3 retrocopies |
retro_ocun_1021, retro_ocun_1732, retro_ocun_218 ,
|
Procavia capensis | ENSPCAG00000014049 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022819 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000367 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017386 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012612 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011716 | 1 retrocopy |