RetrogeneDB ID: | retro_ocun_322 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:164075624..164076312(+) | ||
Located in intron of: | ENSOCUG00000026462 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DLST | ||
Ensembl ID: | ENSOCUG00000015606 | ||
Aliases: | None | ||
Description: | dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) [Source:HGNC Symbol;Acc:2911] |
Percent Identity: | 58.23 % |
Parental protein coverage: | 51.56 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 5 |
Parental | EHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHKDAFLKKHN-LKLGFMSAFVKASAF |
E..EK.N.M.Q.I.Q.LKE..NTCA.L.TFNEID.SNIQ.M.A.HKDAFLKKH..LKLGFM..F.K..AF | |
Retrocopy | EDQEKINKM*QCIVQHLKET*NTCAILMTFNEIDLSNIQYMKA*HKDAFLKKHT<LKLGFMLSFAKPLAF |
Parental | ALQEQPIVNAVIDDSTKEVVYR-DYIDISVAVATPRGLVV-PVIRNVETMNYADIERTISELGEKARKNE |
A.QEQP.VNA.I..S.KE.VYR.DYIDISV..A.P..L.V..VIRN......A.IE....ELGE...KNE | |
Retrocopy | ASQEQPVVNALIEESAKEMVYR<DYIDISVVLAIPQVLLV<SVIRNMKAIINAEIE*AVGELGE-M*KNE |
Parental | LAIEDMDGGTFTISNGGVFGSLFGTPI-INPPQSAI-LGMHAIFDRPVAVGGKVEVRPMMFVALTYDHRL |
LA.E.MDG.TF.IS.G..FG..F.TP..I..PQSAI....H.IF.R.V..G..VEV..MM..ALT..HR. | |
Retrocopy | LAFEGMDGCTFFISTGSIFGLFFRTPL<IKLPQSAI<QVLHVIFNRAVTMGDNVEVWTMMYEALTFSHRM |
Parental | IDGREAVTFLRKIKAAVEDPRVLLLDL |
ID..E..T....IK..VE.PRVL.L.. | |
Retrocopy | IDSKENNTLF*QIKSSVEHPRVLSLSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 74 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 172 .41 RPM |
SRP017611_liver | 0 .00 RPM | 36 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000009316 | 1 retrocopy | |
Homo sapiens | ENSG00000119689 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011591 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016330 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015606 | 1 retrocopy |
retro_ocun_322 ,
|
Pan troglodytes | ENSPTRG00000006543 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001915 | 1 retrocopy | |
Xenopus tropicalis | ENSXETG00000013264 | 1 retrocopy |