RetrogeneDB ID: | retro_xtro_46 | ||
Retrocopylocation | Organism: | Xenopus (Xenopus tropicalis) | |
Coordinates: | GL179807.1:653..1370(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | dlst | ||
Ensembl ID: | ENSXETG00000013264 | ||
Aliases: | None | ||
Description: | dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) [Source:Jamboree;Acc:XB-GENE-1016310] |
Percent Identity: | 56.43 % |
Parental protein coverage: | 53.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ATQPASARSEHRVKMNRMRQRIAQRLKEAQNTCAMLTTFNEVDMSNIHQMRSMHKDSFLKKHGLKLGFMS |
A......R.E.RV.M.R.R.R.A.RL...Q.T.A.LTTFNEV.M......R....D.F.K.HG.KLGFMS | |
Retrocopy | AAPDLGGRPEQRVPMSRLRARVAERLLQSQSTNAILTTFNEVNMAPVMELRKKFQDAFTKEHGVKLGFMS |
Parental | AFVKASAFALQDQPAVNGVIDDTTKEIVYRDYIDISVAVSTPRGLVVPVLRNVESMNFADIERTIAELGE |
.FVKA...AL...P..N...D.....IVY..Y.DI..AV..PRGLVVP.LRN...M.FADIE..IAE.G. | |
Retrocopy | FFVKAAVHALKKYPVLNASVDGN--DIVYHGYFDIGIAVGSPRGLVVPILRNADQMGFADIEKKIAEFGK |
Parental | KARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAVSGKVEIRPMMYVALTY |
KA....L.IE.M.GGTF.ISNGG.FGS...TPIINPPQSAILG.H...DR.V...G.V..RPM.Y.A..Y | |
Retrocopy | KAAEGKLGIEEMSGGTFSISNGGTFGSMMSTPIINPPQSAILGVHATKDRAVVENGQVVVRPMNYLAMSY |
Parental | DHRLIDGREAVLFLRKIKSAVEDPRVLLLDL |
DHR.IDGREAVL.L...K.A.EDP..LL.DL | |
Retrocopy | DHRIIDGREAVLGLVAMKDALEDPSRLLFDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 104 .68 RPM |
SRP007412_heart | 0 .00 RPM | 302 .56 RPM |
SRP007412_kidney | 0 .00 RPM | 302 .56 RPM |
SRP007412_liver | 0 .00 RPM | 94 .90 RPM |
SRP007412_skeletal_muscle | 0 .00 RPM | 364 .58 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000009316 | 1 retrocopy | |
Homo sapiens | ENSG00000119689 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011591 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016330 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015606 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006543 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001915 | 1 retrocopy | |
Xenopus tropicalis | ENSXETG00000013264 | 1 retrocopy |
retro_xtro_46 ,
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