RetrogeneDB ID: | retro_ocun_576 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:102053964..102054318(-) | ||
Located in intron of: | ENSOCUG00000002744 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000024678 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMED2 | ||
Ensembl ID: | ENSOCUG00000003453 | ||
Aliases: | None | ||
Description: | transmembrane emp24 domain trafficking protein 2 [Source:HGNC Symbol;Acc:16996] |
Percent Identity: | 93.22 % |
Parental protein coverage: | 82.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LQITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQN |
..ITGPD.KGIY.G.RESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDI.EAPKGQDMETEAHQN | |
Retrocopy | VEITGPDDKGIYRGGRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIEEAPKGQDMETEAHQN |
Parental | KLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE |
KLEEMI.ELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF. | |
Retrocopy | KLEEMISELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .37 RPM | 38 .80 RPM |
SRP017611_kidney | 9 .53 RPM | 80 .38 RPM |
SRP017611_liver | 4 .93 RPM | 47 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000039630 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000006459 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003453 | 1 retrocopy |
retro_ocun_576 ,
|
Oryctolagus cuniculus | ENSOCUG00000012427 | 1 retrocopy |