Parental gene:

TMED2, ENSBTAG00000039630

Aliases:None
Description:transmembrane emp24 domain-containing protein 2 precursor [Source:RefSeq peptide;Acc:NP_001153290]
Organism:Cow (Bos taurus)
Coordinates:17:54330420..54338333(-)


>ENSBTAG00000039630
ATGGTGACGCTTGCTGAGCTGCTGGTGCTCCTGGCCGCCCTCCTGGCCACGGCCTCGGGCTACTTCGTCAGCATTGACGC
GCATGCAGAGGAGTGCTTCTTCGAGCGGGTCACCTCGGGCACCAAGATGGGCCTCATCTTTGAGGTGGCCGAGGGCGGCT
TCCTGGACATCGACGTGGAGATTACAGGACCTGATAATAAAGGAATTTATAAAGGAGACCGGGAGTCCAGTGGGAAATAC
ACATTTGCTGCTCACATGGATGGAACATATAAGTTTTGTTTTAGCAATAGGATGTCTACCATGACTCCAAAAATAGTGAT
GTTCACCATTGACATCGGGGAAGCCCCCAAAGGACAAGACATGGAAACAGAAGCTCACCAGAACAAGCTAGAAGAAATGA
TTAATGAGCTCGCAGTGGCGATGACAGCTGTGAAGCATGAACAGGAATACATGGAAGTTCGAGAGAGAATACACAGAGCA
ATCAATGACAACACAAACAGCAGAGTGGTCCTTTGGTCCTTCTTTGAAGCTCTTGTTCTAGTTGCCATGACATTGGGACA
GATCTACTACCTGAAGAGATTCTTCGAAGTCCGGAGGGTTGTTTAA

Library Parental gene expression (RPM)
ERP005899_liver 46 .93 RPM
ERP005899_muscle 119 .88 RPM
SRP017611_brain 28 .50 RPM
SRP017611_kidney 58 .26 RPM
SRP017611_liver 160 .46 RPM
SRP030211_testis 53 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015262 ortholog_one2one 2 retrogenes
retro_amel_1923, retro_amel_337,
Choloepus hoffmanni ENSCHOG00000012728 ortholog_one2many 6 retrogenes
retro_chof_104, retro_chof_1277, retro_chof_2323, retro_chof_2601, retro_chof_2709, retro_chof_981,
Callithrix jacchus ENSCJAG00000020466 ortholog_one2one 1 retrogene
retro_cjac_1392,
Echinops telfairi ENSETEG00000000556 ortholog_one2one 2 retrogenes
retro_etel_2109, retro_etel_2154,
Homo sapiens ENSG00000086598 ortholog_one2one 1 retrogene
retro_hsap_2793,
Gorilla gorilla ENSGGOG00000028536 ortholog_one2one 1 retrogene
retro_ggor_1943,
Macropus eugenii ENSMEUG00000006459 possible_ortholog 2 retrogenes
retro_meug_1478, retro_meug_745,
Macaca mulatta ENSMMUG00000031491 ortholog_one2one 2 retrogenes
retro_mmul_1439, retro_mmul_613,
Mustela putorius furo ENSMPUG00000001598 ortholog_one2one 1 retrogene
retro_mputfur_1241,
Mus musculus ENSMUSG00000029390 ortholog_one2one 2 retrogenes
retro_mmus_1361, retro_mmus_3262,
Nomascus leucogenys ENSNLEG00000001652 ortholog_one2one 2 retrogenes
retro_nleu_2454, retro_nleu_2794,
Oryctolagus cuniculus ENSOCUG00000003453 possible_ortholog 1 retrogene
retro_ocun_576,
Otolemur garnettii ENSOGAG00000009192 ortholog_one2one 1 retrogene
retro_ogar_2548,
Pongo abelii ENSPPYG00000005090 ortholog_one2one 3 retrogenes
retro_pabe_1919, retro_pabe_2227, retro_pabe_3597,
Tursiops truncatus ENSTTRG00000007249 possible_ortholog 7 retrogenes
retro_ttru_1369, retro_ttru_1592, retro_ttru_1750, retro_ttru_1815, retro_ttru_216, retro_ttru_43, retro_ttru_615,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_52 93.53 100.00
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2. retro_btau_819 84.73 100.00
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Download FASTA sequences of all ENSBTAG00000039630 retrocopies