RetrogeneDB ID: | retro_ocun_625 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:120563391..120563695(+) | ||
Located in intron of: | ENSOCUG00000014294 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000013398 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSNTTVPNAP-QANSDSMVGYVLGPFFLITLVGVVVAVVMYVQKRKRVDRLRHHLLPM-YSYDPAEELHE |
MSNTTVP.AP.QANSDSMVGYVLGPFFLITLVGVVVAVVMYVQKRKRV..LR.HLLP..YSYDPAEELHE | |
Retrocopy | MSNTTVPSAP<QANSDSMVGYVLGPFFLITLVGVVVAVVMYVQKRKRVGWLRRHLLPR<YSYDPAEELHE |
Parental | AEQELLSDVGDPKVVHGWQSGYQHKRVPLLDVKT |
AEQELLSDVGDPKVVHGWQ.GY.HKRVPLLDVKT | |
Retrocopy | AEQELLSDVGDPKVVHGWQGGYHHKRVPLLDVKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 14 .96 RPM |
SRP017611_kidney | 0 .20 RPM | 8 .51 RPM |
SRP017611_liver | 0 .00 RPM | 1 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001058 | 1 retrocopy | |
Bos taurus | ENSBTAG00000034519 | 1 retrocopy | |
Equus caballus | ENSECAG00000005108 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000011876 | 1 retrocopy | |
Mus musculus | ENSMUSG00000062753 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013398 | 1 retrocopy |
retro_ocun_625 ,
|
Pelodiscus sinensis | ENSPSIG00000004692 | 1 retrocopy |