RetrogeneDB ID: | retro_ocun_739 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:14594924..14595617(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000003891 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.35 % |
Parental protein coverage: | 50.99 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | LGVSHPVLKQVAEQFLNMRGGLGLAGVKARYRGGEIREQTGDSLVHAAVVAESAAMGSAEANAFSVLQHV |
LGVSHPV.KQV.E.FL.MRGGLGLAG.KA.Y.GGEI.EQTGD.LV.AA..A.SAAMGSAEA..FSVLQHV | |
Retrocopy | LGVSHPVRKQVTE*FLDMRGGLGLAGAKAEYSGGEI*EQTGDGLVYAALIA*SAAMGSAEASVFSVLQHV |
Parental | LGAGPHVKRGSNATSLLYQAVAKGTHQPFDVSAFNASYTDSGLFGIYTISQAAAAGDVIKAAYNQVKTVA |
L.AGPHVKRGSNATS..YQAVAKGTHQP.D.SAFNAS...SGLF.IY.ISQAA...D...AAY..VK.VA | |
Retrocopy | LSAGPHVKRGSNATSFVYQAVAKGTHQPSDASAFNASHSGSGLFRIYSISQAATDRDAFTAAYKKVKPVA |
Parental | QGNLSSADVQAAKNKLKAGYLMSVESSEGFLDEVGSQALIAGSYVPPSTVLQQIDSVADADIVNAAKKFV |
QGNLSSADVQAAKN.L.AG.LM.VES.EGFLDEVGSQAL.A.SYVP.STV.QQ.D.V.DADI.NA.KKFV | |
Retrocopy | QGNLSSADVQAAKNNLQAGCLMLVESLEGFLDEVGSQALVASSYVPLSTVVQQSDLVTDADIINAVKKFV |
Parental | SGQKSMAASGNLGHTPFVDEL |
SGQK.MAASGNLGH.PFVDEL | |
Retrocopy | SGQKLMAASGNLGHIPFVDEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 157 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 222 .27 RPM |
SRP017611_liver | 0 .00 RPM | 65 .82 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021651 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000017756 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009116 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001084 | 1 retrocopy | |
Homo sapiens | ENSG00000140740 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015379 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003345 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018287 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007645 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016849 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012185 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003891 | 2 retrocopies |
retro_ocun_604, retro_ocun_739 ,
|
Otolemur garnettii | ENSOGAG00000005478 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000000419 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007174 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007871 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010670 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010785 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010914 | 1 retrocopy |