Parental gene:

UQCRC2, ENSCJAG00000009116

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:20756675..20784133(+)


>ENSCJAG00000009116
ATGAAGCTACTAACCAGAGCCGGATCCTTCTCGAGATTTTATTCTCTCAAAGTTGCCCCCAAAGTTAAAGCCACAGCTGC
GCCTGCAGGAGCACCGCCACAACCTCAGGACCTCGAGTTTACCAAGTTACCAAATGGTTTGGTGATTGCTTCTTTGGAAA
ACTATGCTCCTGTATCAAGAATTGGTTTGTTCATTAAAGCAGGCAGTAGATATGAGGACTCCAACAATTTAGGAACCACT
CATTTGCTGCGTCTTGCATCCGGTCTGACGACAAAAGGAGCTTCATCTTTCAAGATAACCCGTGGAATTGAAGCAGTTGG
TGGCTTATTAAGTGTGACTGCAACAAGGGAAAACATGGCTTACACTGTGGAATGCCTGCGGGGCGATGTTGATATTCTAA
TGGAGTTCCTGCTCAATGTCACCACATCACCAGAATTTCGTCACTGGGAAGTAGGTGAGATTCAGCCTCAGCTAAAGATT
GACAAGGCTGTGGCCTTTCAGAATCCACAGACTCATGTCATTGAAAATTTGCATGCAGCAGCTTACCGGAATGCCTTGGC
TAATCCCTTGTATTGTCCTGACTATAGGATTGGAAAAGTGACACCAGAGGAGTTACATTACTTCGTTCAGAACCATTTCA
CAAGTGCAAGAATGGCTTTGATTGGACTTGGTGTGAGTCATCCTGTTCTAAAGCAAGTTGCTGAACAGTTTCTCAACATG
AGAGGTGGACTTGGTTTATCTGGTGCCAAGGCCAAGTACCGTGGAGGCGAAATCCGAGAACAGAATGGGGACAGTCTTGT
CCATGCCGCTCTTGTAGCAGAAAGTGCTGCCGCGGGAAGTGCAGAGGCAAATGCATTTAGTGTTCTTCAGCATGTCCTCG
GTGCTGGGCCACATATCAAGAGGGGCAGCAACACCACCAGCCATCTGCACCAGGCTGTTACCAAGGCAACTCACCAGCCA
TTCGATGTTTCTGCATTTAATGCCAGTTACTCAGATTCTGGACTCTTTGGGATTTATACTATCTCCCAGGCCACAGCTGC
TGGAGATGTTATCAAGGCTGCCTATAATCAAGTAAAAACAATTGCCCAAGGAAACCTTTCCAACACAGATGTCCAAACTG
CCAAGAACAAGCTGAAAGCTGGATACCTAATGTCAGTGGAGTCTTCTGAGGGTCTCCTGGAAGAAGTCGGGTCCCAGGCC
CTAATTGCTGGTTCTTACGTGCCACCATCCACAGTCCTTCAGCAGATTGATTCAGTGGCTAACGCTGATATCATAAATGC
GGCAAAGAAGTTTGTTTCTGGCAAAAAGTCGATGGCAGCAAGTGGAAATTTGGGACATACACCTTTTGTTGATGAGTTGT
AA

Library Parental gene expression (RPM)
SRP051959_spleen 35 .67 RPM
SRP051959_skeletal_muscle 134 .61 RPM
SRP051959_lymph_node 27 .94 RPM
SRP051959_lung 30 .50 RPM
SRP051959_liver 100 .57 RPM
SRP051959_kidney 82 .82 RPM
SRP051959_heart 118 .05 RPM
SRP051959_colon 50 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021651 ortholog_one2many 2 retrogenes
retro_btau_1008, retro_btau_1668,
Canis familiaris ENSCAFG00000017756 ortholog_one2many 1 retrogene
retro_cfam_2075,
Echinops telfairi ENSETEG00000001084 ortholog_one2many 1 retrogene
retro_etel_2087,
Homo sapiens ENSG00000140740 ortholog_one2many 1 retrogene
retro_hsap_2785,
Gorilla gorilla ENSGGOG00000015379 ortholog_one2many 1 retrogene
retro_ggor_1941,
Myotis lucifugus ENSMLUG00000003345 ortholog_many2many 2 retrogenes
retro_mluc_1391, retro_mluc_770,
Macaca mulatta ENSMMUG00000018287 ortholog_one2many 2 retrogenes
retro_mmul_1442, retro_mmul_683,
Monodelphis domestica ENSMODG00000007645 ortholog_one2many 1 retrogene
retro_mdom_327,
Mustela putorius furo ENSMPUG00000016849 ortholog_many2many 1 retrogene
retro_mputfur_1042,
Nomascus leucogenys ENSNLEG00000012185 ortholog_one2many 1 retrogene
retro_nleu_685,
Oryctolagus cuniculus ENSOCUG00000003891 ortholog_many2many 2 retrogenes
retro_ocun_604, retro_ocun_739,
Otolemur garnettii ENSOGAG00000005478 ortholog_many2many 4 retrogenes
retro_ogar_1113, retro_ogar_112, retro_ogar_1934, retro_ogar_82,
Ochotona princeps ENSOPRG00000000419 ortholog_one2many 1 retrogene
retro_opri_455,
Pongo abelii ENSPPYG00000007174 ortholog_one2many 1 retrogene
retro_pabe_2232,
Pan troglodytes ENSPTRG00000007871 ortholog_one2many 1 retrogene
retro_ptro_1886,
Sorex araneus ENSSARG00000010670 ortholog_one2many 1 retrogene
retro_sara_231,
Tupaia belangeri ENSTBEG00000010785 possible_ortholog 1 retrogene
retro_tbel_3988,
Vicugna pacos ENSVPAG00000010914 ortholog_one2many 1 retrogene
retro_vpac_640,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_222 99.12 100.00
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Download FASTA sequences of all ENSCJAG00000009116 retrocopies