RetrogeneDB ID: | retro_ocun_984 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 18:3622000..3622392(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAA50 | ||
Ensembl ID: | ENSOCUG00000006467 | ||
Aliases: | None | ||
Description: | N(alpha)-acetyltransferase 50, NatE catalytic subunit [Source:HGNC Symbol;Acc:29533] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 78.11 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | TPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQKRLYIMTLGCLA |
TPHNIKQL.R.N..IF..SYNDK.YKD.LEVGEL.K.A.FNDIAV.A.CC.VDHSQNQKRL.IMTLGCL. | |
Retrocopy | TPHNIKQLERMN*FIFSSSYNDKIYKDFLEVGELSKFAHFNDIAVYAICCKVDHSQNQKRLFIMTLGCLT |
Parental | PYRRLGIG-TKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRIE |
...RL.IG..KMLNH.L.IC.KDG.FD.I...VQI.NES..D.YRKFGFEI..TK.NY.KRIE | |
Retrocopy | LH*RLVIG<EKMLNHDLSIC*KDGIFDSI*FYVQINNES-VDLYRKFGFEITKTKENYHKRIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .25 RPM |
SRP017611_kidney | 0 .00 RPM | 30 .41 RPM |
SRP017611_liver | 0 .00 RPM | 10 .64 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000014169 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000006589 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000004023 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006467 | 2 retrocopies |
retro_ocun_466, retro_ocun_984 ,
|
Otolemur garnettii | ENSOGAG00000011197 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009780 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000009438 | 1 retrocopy |