RetrogeneDB ID: | retro_ogar_1211 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873539.1:16175785..16176318(+) | ||
Located in intron of: | ENSOGAG00000006619 | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000027460 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2R2 | ||
Ensembl ID: | ENSOGAG00000029045 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2R 2 [Source:HGNC Symbol;Acc:19907] |
Percent Identity: | 85.64 % |
Parental protein coverage: | 80.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | YFKAHIKFPIDYPYSP-PTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL |
YFK.H.KFPIDYPYSP..TFR.LTK.WHPNIY.NGDVCISILHPPVDD..SGELPSER.NP.QN.RT.LL | |
Retrocopy | YFKEHLKFPIDYPYSP<TTFRSLTKLWHPNIYGNGDVCISILHPPVDDSGSGELPSERGNPVQNGRTLLL |
Parental | SVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCIKTK |
.VISLLNEP..FSPANVDASVMFRK.RDSKGKDKEYAEII.KQVSATKAEAEKDGVK.PT.LAEYCIKT. | |
Retrocopy | NVISLLNEPKAFSPANVDASVMFRKCRDSKGKDKEYAEIIGKQVSATKAEAEKDGVKIPTSLAEYCIKTE |
Parental | VPSNDNSSDLLYDLYDDDIDDEDEEEEDADCYDDDDSGNEE |
VPS.DNSSDLLYDLY..DI.DEDEEEEDADC.DDDDSGNEE | |
Retrocopy | VPSSDNSSDLLYDLY--DINDEDEEEEDADCCDDDDSGNEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000031810 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007589 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006793 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023588 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000008795 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029045 | 3 retrocopies |
retro_ogar_1211 , retro_ogar_2040, retro_ogar_2946,
|
Rattus norvegicus | ENSRNOG00000010727 | 1 retrocopy |