RetrogeneDB ID:

retro_ogar_1211

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873539.1:16175785..16176318(+)
Located in intron of:ENSOGAG00000006619
Retrocopy
information
Ensembl ID:ENSOGAG00000027460
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2R2
Ensembl ID:ENSOGAG00000029045
Aliases:None
Description:ubiquitin-conjugating enzyme E2R 2 [Source:HGNC Symbol;Acc:19907]


Retrocopy-Parental alignment summary:






>retro_ogar_1211
TACTTCAAGGAGCATCTTAAATTTCCTATTGACTACCCATATTCACCACTACCTTCAGATCCTTGACCAAACTGTGGCAC
CCCAACATTTATGGGAATGGAGATGTTTGCATTTCGATTCTTCATCCGCCTGTAGATGACTCAGGGAGTGGAGAACTGCC
CTCTGAAAGAGGGAATCCTGTTCAAAATGGGAGGACTCTTCTGTTAAATGTAATCTCACTGCTTAATGAGCCCAAGGCCT
TCTCCCCAGCCAATGTGGATGCTTCAGTTATGTTCAGAAAATGCAGAGACAGTAAAGGAAAAGACAAAGAATATGCCGAA
ATCATTGGGAAACAGGTTTCGGCCACCAAGGCCGAAGCAGAAAAGGATGGAGTGAAGATCCCCACGAGCCTGGCTGAATA
CTGCATCAAAACCGAAGTGCCTTCCAGTGACAACAGCTCAGATTTGCTTTATGACTTGTATGACATTAATGACGAAGATG
AGGAGGAGGAAGATGCTGACTGTTGTGATGATGACGATTCTGGGAATGAGGAG

ORF - retro_ogar_1211 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.64 %
Parental protein coverage: 80.36 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalYFKAHIKFPIDYPYSP-PTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL
YFK.H.KFPIDYPYSP..TFR.LTK.WHPNIY.NGDVCISILHPPVDD..SGELPSER.NP.QN.RT.LL
RetrocopyYFKEHLKFPIDYPYSP<TTFRSLTKLWHPNIYGNGDVCISILHPPVDDSGSGELPSERGNPVQNGRTLLL
ParentalSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCIKTK
.VISLLNEP..FSPANVDASVMFRK.RDSKGKDKEYAEII.KQVSATKAEAEKDGVK.PT.LAEYCIKT.
RetrocopyNVISLLNEPKAFSPANVDASVMFRKCRDSKGKDKEYAEIIGKQVSATKAEAEKDGVKIPTSLAEYCIKTE
ParentalVPSNDNSSDLLYDLYDDDIDDEDEEEEDADCYDDDDSGNEE
VPS.DNSSDLLYDLY..DI.DEDEEEEDADC.DDDDSGNEE
RetrocopyVPSSDNSSDLLYDLY--DINDEDEEEEDADCCDDDDSGNEE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1211 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000318101 retrocopy
Dipodomys ordii ENSDORG000000075891 retrocopy
Myotis lucifugus ENSMLUG000000067931 retrocopy
Oryctolagus cuniculus ENSOCUG000000235883 retrocopies
Otolemur garnettii ENSOGAG000000087951 retrocopy
Otolemur garnettii ENSOGAG00000029045 3 retrocopies
retro_ogar_1211 , retro_ogar_2040, retro_ogar_2946,
Rattus norvegicus ENSRNOG000000107271 retrocopy



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