RetrogeneDB ID: retro_mluc_2175

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430077:326221..326661(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003720
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000006793
• Aliases: None
• Description: None

Sequence

>retro_mluc_2175
CCTATTGACCACCCACATTCACCACCTACCTTCAGGTTCTTGACCAAAACGTGGCACCCCAACATTTATGAGAATGGAGA
TGTCGGCATTTCAATTCTTCATCCACCGTAGATGGTGACCCACAGAGCCGTGAACTGCCCTCGGAAAGGTGGAATCCTGC
TCAGAAGGTCAGGACTACCCTGTTAAGTGTAGTCTCGTTGCTTAATGAGCCCAACCCCTTCTCCCCAGCCAATGTGGATG
CTTCCGTTATGTTCAGGAAATGGAGGGACAGTAAAGGAAAAGACGAAGAGTATGCTGACATCGTTAAAAAACAGGTTTCA
GCCACTAAAGCCGAAGCAGAAAAGGACGGCGTGCAAGTCCCCGCAACCCTGGCGGGATATTGCATCAAAACTAAAGTGCC
TTCCAATTACAACAGCTCAGATTTGCTTTATGATGCCTTG

Alignment

ORF - retro_mluc_2175 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.81 %
• Parental protein coverage: 80.22 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPP-VD-DPQSGELPSERWNPTQNVRTILLSVISLLN
          PID.P.SPPTFRFLTK.WHPNIYENGDV.ISILHPP.VD.DPQS.ELPSERWNP.Q.VRT.LLSV.SLLN
Retrocopy PIDHPHSPPTFRFLTKTWHPNIYENGDVGISILHPP<VDGDPQSRELPSERWNPAQKVRTTLLSVVSLLN

Parental  EPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCIKTKVPSNDNS
          EPN.FSPANVDASVMFRKWRDSKGKD.EYA.I..KQVSATKAEAEKDGV.VP.TLA.YCIKTKVPSN.NS
Retrocopy EPNPFSPANVDASVMFRKWRDSKGKDEEYADIVKKQVSATKAEAEKDGVQVPATLAGYCIKTKVPSNYNS

Parental  SDLLYDDL
          SDLLYD.L
Retrocopy SDLLYDAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2175 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 26 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000031810	1 retrocopy	retro_cfam_1138,
Dipodomys ordii	ENSDORG00000007589	1 retrocopy	retro_dord_306,
Echinops telfairi	ENSETEG00000011574	1 retrocopy	retro_etel_1226,
Myotis lucifugus	ENSMLUG00000002118	1 retrocopy	retro_mluc_104,
Myotis lucifugus	ENSMLUG00000006793	1 retrocopy	retro_mluc_2175 ,
Monodelphis domestica	ENSMODG00000003686	2 retrocopies	retro_mdom_45, retro_mdom_923,
Nomascus leucogenys	ENSNLEG00000005052	3 retrocopies	retro_nleu_1451, retro_nleu_2245, retro_nleu_2987,
Oryctolagus cuniculus	ENSOCUG00000023588	3 retrocopies	retro_ocun_131, retro_ocun_1719, retro_ocun_1793,
Otolemur garnettii	ENSOGAG00000029045	3 retrocopies	retro_ogar_1211, retro_ogar_2040, retro_ogar_2946,
Rattus norvegicus	ENSRNOG00000010727	1 retrocopy	retro_rnor_1508,
Sorex araneus	ENSSARG00000005734	1 retrocopy	retro_sara_528,
Tarsius syrichta	ENSTSYG00000013265	7 retrocopies	retro_tsyr_1118, retro_tsyr_1526, retro_tsyr_1527, retro_tsyr_1819, retro_tsyr_432, retro_tsyr_494, retro_tsyr_830,
Tursiops truncatus	ENSTTRG00000010587	1 retrocopy	retro_ttru_724,