RetrogeneDB ID: | retro_ogar_1262 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873540.1:17703765..17704224(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF141 | ||
Ensembl ID: | ENSOGAG00000001765 | ||
Aliases: | None | ||
Description: | ring finger protein 141 [Source:HGNC Symbol;Acc:21159] |
Percent Identity: | 69.14 % |
Parental protein coverage: | 70.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | AKHVTLVRESGSLTYEEFLGRVAELNDVTAKVASGQEKHLLFEVQPGSDSSAFWKVVVRVVCTKINKSSG |
AKH.TLV.....L..EEF..R.AEL.D.TAKVASGQEKHLL..V..GSDSSAFWKVV..V.CTKINKSSG | |
Retrocopy | AKHITLVQVAP*LN-EEFFRRMAELKDITAKVASGQEKHLL*-VRHGSDSSAFWKVVIQVDCTKINKSSG |
Parental | IVEASRIMNLYQFIQLYKDITSQAAGVLLAQSSTSEEHDENSSSVTSCQASFWMGRVKQLTDEEECCICM |
.VEAS.I.NLY.FIQL..DI.SQ......AQSSTSEE.DENS.SV.SCQ.S..MGR.K.LTD..EC...M | |
Retrocopy | MVEASQILNLY*FIQL--DIRSQPG--VSAQSSTSEETDENSFSVASCQVSL-MGREKHLTD--ECRVYM |
Parental | DGRADLILPCAHSFCQKCIDKW |
.GRA.LIL.CAHSF.QKCIDKW | |
Retrocopy | EGRAELILFCAHSFGQKCIDKW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011014 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000007808 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014558 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030788 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002807 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001765 | 1 retrocopy |
retro_ogar_1262 ,
|
Sarcophilus harrisii | ENSSHAG00000002101 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000019740 | 1 retrocopy |