RetrogeneDB ID: retro_ogar_1561

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873551.1:4193110..4194187(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C17orf80
• Ensembl ID: ENSOGAG00000013150
• Aliases: None
• Description: chromosome 17 open reading frame 80 [Source:HGNC Symbol;Acc:29601]

Sequence

>retro_ogar_1561
GGTAACAATTACAGTTCTCCAAAGAATCTGAGTGATAAAGTTAAAAGAGTAAGAACATCATTGTCGAGCAATGAGAGAGA
TTCCAAAGGCAGGGATCACCTCTCAGGAGCCCCTACTGCTGTTAAAGATACTGGGATTCGGGGAAAAGACATAGAATCAC
TAATTTTAAGCCTTAAAATTAGCTCATTAAGTAAAATCCGAGTCATGGAGAACCAAGAAAAAGGACTTAGCCTTGGAGTA
GAGGTGGGCAGGAAGAAAGGAAACGCAGAGAAAAGTGTGTCTGAGACAGAAATGCAGAAGTGGACGGCCATCAGCAATGG
CTCTGGGAACTTCAAAACTGACAGTTCAGCCACAGAGAAGAAATCTGAAGATGGAGGACATTTAAATTTGTACATTCCAA
GGGAGACAACTTACAATGGATTTTTTTCTGTGTTACAGGCAAGTAGTCAAAAAAAGTCTTGCCTCTCTGGCTACACAATT
TATTCAAGAAGAAAAAGCAGAAGCCAGAGGTCATAACTGAGTCCCTGATATAAAGCCCTTAATGGAGAATAAGGAGTAAG
TTTCTCTGGAGCCCAAATCTGGCTGTCAGTTTCACGCAATGCACATTGGATACCAACACTCTGTCCATTCAGCCCTGCTG
CATCACACGTCTAAGATCCCCTTCCTCAGTCATGTTGCAACTGCTGATAGAAAGATGCTCAGCTCCATGGGGCTGGAGTG
GTTTCCAGAGCTCTATCCCGGTTATCTTGGACTAGGGGTGTTGCCAGGGAAGCCTCAGTATTGGCATGAAGTGGCCCAGA
AGCCACAGTTCATCAGTCCCCAGGGGGAAGACTCTCACAAGTTCCTTTGTTGGAAAGAAGTTCAACTGATATGAGTGTGG
AATCCCTGACCTGGCTTACAACCTCCAACTTCTCTCAAAGGAGGCTTTTGGAAACTGTACAAAAAGGCTGGCTGAGGTGC
AACACCACCACCAGGAAGAGTGGAGTCGGCAGCATCACAGTGCTCTTCACAGGGTACTTCAGCCTGTGCTGTAGCTGGAG
TTTCAGGCATCTCAAGCTGCTACGCTGGTGTTGGCCT

Alignment

ORF - retro_ogar_1561 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.47 %
• Parental protein coverage: 58.92 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GDNYSSPKNLSGEVKRVRTSLSSNERDSRGRDHLSGASTDVKDTETQEKDIESLILSLKINSLGKIRVME
          G.NYSSPKNLS..VKRVRTSLSSNERDS.GRDHLSGA.T.VKDT....KDIESLILSLKI.SL.KIRVME
Retrocopy GNNYSSPKNLSDKVKRVRTSLSSNERDSKGRDHLSGAPTAVKDTGIRGKDIESLILSLKISSLSKIRVME

Parental  NQEKGLSLGVEMGGRKGNTEKSVSETERQKWTAMSNGSGNFKTDGSAPEKESEVGGHLNLYIPRETTSNG
          NQEKGLSLGVE.G..KGN.EKSVSETE.QKWTA.SNGSGNFKTD.SA.EK.SE.GGHLNLYIPRETT.NG
Retrocopy NQEKGLSLGVEVGRKKGNAEKSVSETEMQKWTAISNGSGNFKTDSSATEKKSEDGGHLNLYIPRETTYNG

Parental  FFSVSQASSQ-KSLVSLGTQFIQEEKAEASGDNRVPDIKALMEKKEQVSLEPKSGSQFHELHVGCQHPFH
          FFSV.QASSQ.KSL.SL.TQFIQEEKAEA.G.N.VPDIK.LME.KE.VSLEPKSG.QFH..H.G.QH..H
Retrocopy FFSVLQASSQ>KSLASLATQFIQEEKAEARGHN*VPDIKPLMENKE*VSLEPKSGCQFHAMHIGYQHSVH

Parental  SA-LHHTSKSPFLSHVATADRKMPSSMGLEWFPELYPGYLGLGVLPGKPQYWHELAQKPQLVSPQ-EGRF
          SA.LHHTSK.PFLSHVATADRKM.SSMGLEWFPELYPGYLGLGVLPGKPQYWHE.AQKPQ..SPQ..GR.
Retrocopy SALLHHTSKIPFLSHVATADRKMLSSMGLEWFPELYPGYLGLGVLPGKPQYWHEVAQKPQFISPQ<GGRL

Parental  SQGTVVPLLERSSTDIRSVESPTWLTTSNFSLRRLLEAVQKGWLRCNTTIRKSGVGSITMLFTGYFILCC
          SQ...VPLLERSSTD..SVES.TWLTTSNFS.RRLLE.VQKGWLRCNTT.RKSGVGSIT.LFTGYF.LCC
Retrocopy SQ---VPLLERSSTDM-SVESLTWLTTSNFSQRRLLETVQKGWLRCNTTTRKSGVGSITVLFTGYFSLCC

Parental  SWSFRHLIL--WCLP
          SWSFRHL.L..WC.P
Retrocopy SWSFRHLKLLRWCWP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1561 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000013150	2 retrocopies	retro_ogar_1561 , retro_ogar_1994,