RetrogeneDB ID: | retro_ogar_1994 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873579.1:1295063..1296666(-) | ||
| Located in intron of: | ENSOGAG00000007843 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | C17orf80 | ||
| Ensembl ID: | ENSOGAG00000013150 | ||
| Aliases: | None | ||
| Description: | chromosome 17 open reading frame 80 [Source:HGNC Symbol;Acc:29601] |
Retrocopy-Parental alignment summary:
>retro_ogar_1994
GACCCCTGGGCTTATGAGTCCAACCCAGGTACACTCCTATGTGCTAAAAAATTGAAAGGGCCAATCAAAGATTTAATGAA
ACCCAAATGGATGGAATTAGAGACAGAAAGTGAGAAAAGAAATTCTAAATTGATAATGGACAAACCAGAACAGACAATTC
AGTCCTTCCCACTACCAGCTGTTGGTTTGGATACTACAGAGGCAGCTTAAAGACATCAAGAATCAAATTCAGCTCTCCTC
CAAAATGTTAAAAAAGTCTGAACCAATGACTACTTTCCAAGGAGAAACCAAGGGTCAGTTTTATGTACCAGGGAACACCT
CTCCTAAGAGAGAAGTTGCCAGAGATTTGTCTAAATCAGGGGAAAGCAGATGTAATCCTTCAGAAGCTGAAACATCTTTC
CTGGTTGATTCAATGGAACTTTCTTTGTCAAATCAAGAAAGAAAATATTCCTCAGCCATACCTAATAATGTACAAACCAC
TTCTGATCTAAAATTGGACAAAATTAATCCCCAAAGATAGGAGCTTCTAGTAAAATTACTAGATGTGCCTATTGGTGACA
ATTACAGTTCTCCAAAGAATCTGAGTGATGAAGTTAAAAGAATAAGAACATCATTGAGCAATGAAAGAGATTCCAAAGGT
GGGGATCACCTCTCAGGAGCCTCTACTGATGTTAAAGACACTGAGACTTGGGAAAAGGACATAGAATCACTAATTTTAAG
CCTTAAAATTAGCTCATTGGGTAAAATCCGAGTCATGGAGAACCAAGAAAAAGGACTTAGCCTTGGAGCAGAGATGTGTG
GGAGGAACGGAAATGCAGAGAAAAGTGTGTCTGAGACAGAAAGGCAGAAATGGACTGCCATCAGCAATGGCTCTGGAATT
TCAAAACCTACGATTCAGCCACAGAGGAGGAATCTGAAGATGGAGGACATTTAAATTTGTACATTCCAAGGGAGACAACT
TACAATGAATTTTTTCTGTGTCACAGGCAAGTAGTCAAAAAATCTTGCCTCTCTGGCTACACAGTTTATTCAAGAAGAAA
AAGCAGAAGCCAGGGTCATAATCGAGTACCCGATACAAAGGCCTTAATGGAGAAGAAGGAGCCAGTTTCTCTGGAGCCCA
AATCTGGCTGTCAGCTTCACAAATTGCACGTTGGATACCAACAACCTTTCCATTCAGCCCTGCATCACACATCTAAGAGC
CCCTTCCTCAATCATGTTGCAACTGCTAATAGAAGGATGCCCAGCTCCATGGGGCTGGAGTGGTTTCCAGAACTCTATCC
TGGTTATCTTGGACTAGGGGTGTTGTCAAAGAAGCCTCAGTATTGGCATGAAGTAGCCCAGAAGCCACAGCTCATCAGTC
CCCAGGAGAGGAAAACACAAGTTCCTTTGTTGGACAGAACTTCAGCTGATATAAGGAGTGTGGAATCCCCAACCTGGTTT
ACAATCTCCAACTTCTCTCTAAGGAGGCTTTTGGAAGCTGTACAAAAAGGCTGGCTTGAGGTGCAGCACCACCATCAGGA
AGAGCGGAGTCGGCAGCATCATGATGCTCTTCATGGGGTACTTCATCCTGTGCTATAGCTGGAGTTTCAGGCATTTGAAG
CTG
ORF - retro_ogar_1994 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.88 % |
| Parental protein coverage: | 88.87 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 6 |
Retrocopy - Parental Gene Alignment:
| Parental | DRKAYESNPGTLPRAKKLKGPIKDLMKAKRMELETESEKRNSKLIMDKPEQTIQSFPLPAVGLERASTTE |
| D..AYESNPGTL..AKKLKGPIKDLMK.K.MELETESEKRNSKLIMDKPEQTIQSFPLPAVGL....TTE | |
| Retrocopy | DPWAYESNPGTLLCAKKLKGPIKDLMKPKWMELETESEKRNSKLIMDKPEQTIQSFPLPAVGLD---TTE |
| Parental | AD-KDIKNQIQLSSKMLKKSEPKTTFQGETKGQFYAPENTSPKREVARDLPKSGESRWNPSEAEASLLVG |
| A..KDIKNQIQLSSKMLKKSEP.TTFQGETKGQFY.P.NTSPKREVARDL.KSGESR.NPSEAE.S.LV. | |
| Retrocopy | AA>KDIKNQIQLSSKMLKKSEPMTTFQGETKGQFYVPGNTSPKREVARDLSKSGESRCNPSEAETSFLVD |
| Parental | SMELSLSDQERKYSSAVPNNVQTTSDLKLDKINPQRQELLVKLLDVPIGDNYSSPKNLSGEVKRVRTSLS |
| SMELSLS.QERKYSSA.PNNVQTTSDLKLDKINPQR.ELLVKLLDVPIGDNYSSPKNLS.EVKR.RTSL. | |
| Retrocopy | SMELSLSNQERKYSSAIPNNVQTTSDLKLDKINPQR*ELLVKLLDVPIGDNYSSPKNLSDEVKRIRTSL- |
| Parental | SNERDSRGRDHLSGASTDVKDTETQEKDIESLILSLKINSLGKIRVMENQEKGLSLGVEMGGRKGNTEKS |
| SNERDS.G.DHLSGASTDVKDTET.EKDIESLILSLKI.SLGKIRVMENQEKGLSLG.EM.GR.GN.EKS | |
| Retrocopy | SNERDSKGGDHLSGASTDVKDTETWEKDIESLILSLKISSLGKIRVMENQEKGLSLGAEMCGRNGNAEKS |
| Parental | VSETERQKWTAMSNGSG-NFKTDGSAPEKESEVGGHLNLYIPRETTSNGF-FSVSQASSQ-KSLVSLGTQ |
| VSETERQKWTA.SNGSG.NFKT..SA.E.ESE.GGHLNLYIPRETT.N.F.FSVSQASSQ.K.L.SL.TQ | |
| Retrocopy | VSETERQKWTAISNGSG<NFKTYDSATEEESEDGGHLNLYIPRETTYNEF<FSVSQASSQ<KNLASLATQ |
| Parental | FIQEEKAEA-SGDNRVPDIKALMEKKEQVSLEPKSGSQFHELHVGCQHPFHSALHHTSKSPFLSHVATAD |
| FIQEEKAEA..G.NRVPD.KALMEKKE.VSLEPKSG.Q.H.LHVG.Q.PFHSALHHTSKSPFL.HVATA. | |
| Retrocopy | FIQEEKAEA<QGHNRVPDTKALMEKKEPVSLEPKSGCQLHKLHVGYQQPFHSALHHTSKSPFLNHVATAN |
| Parental | RKMPSSMGLEWFPELYPGYLGLGVLPGKPQYWHELAQKPQLVSPQEGRFSQGTVVPLLERSSTDIRSVES |
| R.MPSSMGLEWFPELYPGYLGLGVL..KPQYWHE.AQKPQL.SPQE......T.VPLL.R.S.DIRSVES | |
| Retrocopy | RRMPSSMGLEWFPELYPGYLGLGVLSKKPQYWHEVAQKPQLISPQERK----TQVPLLDRTSADIRSVES |
| Parental | PTWLTTSNFSLRRLLEAVQKGW-LRCNTTIRKSGVGSITMLFTGYFILCCSWSFRHLIL |
| PTW.T.SNFSLRRLLEAVQKGW.LRC.TTIRKSGVGSI.MLF.GYFILC.SWSFRHL.L | |
| Retrocopy | PTWFTISNFSLRRLLEAVQKGW>LRCSTTIRKSGVGSIMMLFMGYFILCYSWSFRHLKL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1994 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000013150 | 2 retrocopies |
retro_ogar_1561, retro_ogar_1994 ,
|