RetrogeneDB ID: retro_ogar_168

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873611.1:4730991..4731951(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000028180
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000001662
• Aliases: None
• Description: None

Sequence

>retro_ogar_168
ATGTCGGAGAGAAAAGTTTTAAACAAATATTACCCACTGGATCTTGACTCATCAAAGATCCCCAAACTCAAGCTCCCCAA
AGACCAGCAGTACGTGGTGCGGTTAATGGCACCCTTCAACATGAGGTGCAAGACATGTGGAGAGTACATCTACAAGGGAA
AGAAGTTCAGTGCTCAGAAGGAAACGGTGCAGAATGAAGTCTATCTGGGCCTGCCCATCTTCCGCTTTTATATTAAGTGC
ACCTGCTGCCTGGCAGAGATCAGGTTCAAGATGGATCCACAAAACACAGACTACACCATGGAGCATGGGGCCACATGGAA
TTTCCAGGCTGAGAAGCTCCTGGAGGAGGAGAAGAGGGTACAGAAGGAAAGGGAGGATGAGGAGCTCAACAATCCCATGA
AGGTGCTGGAGAACCGGACCAAGGACTCCAAGCTGGAGATGGAGGTGCTAGAGAACCTGCAGGAGCTCAAGGACCTAATC
CAACGCCAGGCCCACGTAGACTTTGAGGCCATGCTGCGGCAGCACCGCCTGTCCGAGGAAGAGCGGCAAAAGCAGGAGCA
GGAGGAGGATGAACAGGAGACAGCAGCCTTGTTGGAGGAAGCTAGAAAAAGAAGACTGCTGGAAGACTCTGACTCTGAGG
ATGCTGCTGCTCCTCCCCCGCCTAGGCCTGCCCTGTGGCCCAGCCCCACTGCCATCCTGGACAAGGCCCCAGAGGCCAAG
GGGAGAGTGGAGAGCTGGGAGCAGGGCATCAGCAGTCTGGGCAGGCCTCAGCTGTCTGGCCTGGAGGTGGTGAAGAAGAC
AAAGGCAGGTGCAGATCAAAACACTGGGCAGGGCCAAGTGATACCAGGCACCCTGCAGAGCAGGAAGGTAGCTGACCCTA
CGCCATTACCACCTGCCACCTCCTCCCTGAGCCAGCTGGGTGTGTATCTGGGCAGCGATGACAGCAGTGGCAGCAACTAA

Alignment

ORF - retro_ogar_168 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.99 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARKETVQNEVYLG
          MSERKVLNKYYP.D.D.SKIPKLKLPKD.QYVVRLMAPFNMRCKTCGEYIYKGKKF.A.KETVQNEVYLG
Retrocopy MSERKVLNKYYPLDLDSSKIPKLKLPKDQQYVVRLMAPFNMRCKTCGEYIYKGKKFSAQKETVQNEVYLG

Parental  LPIFRFYIKCTRCLAEITFKTDPQNTDYTMEHGATRNFQAEKLLEEEEKRVQKEREDEELNNPMKVLENR
          LPIFRFYIKCT.CLAEI.FK.DPQNTDYTMEHGAT.NFQAEKLLEEE.KRVQKEREDEELNNPMKVLENR
Retrocopy LPIFRFYIKCTCCLAEIRFKMDPQNTDYTMEHGATWNFQAEKLLEEE-KRVQKEREDEELNNPMKVLENR

Parental  TKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRLSEEERQKQEQEEDEQETAALLEEARKRRLLED
          TKDSKLEMEVLENLQELKDL.QRQAHVDFEAMLRQHRLSEEERQKQEQEEDEQETAALLEEARKRRLLED
Retrocopy TKDSKLEMEVLENLQELKDLIQRQAHVDFEAMLRQHRLSEEERQKQEQEEDEQETAALLEEARKRRLLED

Parental  SDSEDDAIPPPPKPALRPSPTAILDEAPKAKRRVESWEQSIGSLGRPRLSGLVVVKKTKAGADQNTGQGQ
          SDSED.A.PPPP.PAL.PSPTAILD.AP.AK.RVESWEQ.I.SLGRP.LSGL.VVKKTKAGADQNTGQGQ
Retrocopy SDSEDAAAPPPPRPALWPSPTAILDKAPEAKGRVESWEQGISSLGRPQLSGLEVVKKTKAGADQNTGQGQ

Parental  VTSATGTLQSRKVADPTPLPPATSSLSQLGVYLDSDDSNGSN
          V....GTLQSRKVADPTPLPPATSSLSQLGVYL.SDDS.GSN
Retrocopy V--IPGTLQSRKVADPTPLPPATSSLSQLGVYLGSDDSSGSN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_168 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000022785	1 retrocopy	retro_ecab_347,
Monodelphis domestica	ENSMODG00000000841	1 retrocopy	retro_mdom_496,
Mus musculus	ENSMUSG00000003208	1 retrocopy	retro_mmus_1640,
Otolemur garnettii	ENSOGAG00000001662	1 retrocopy	retro_ogar_168 ,
Sarcophilus harrisii	ENSSHAG00000010428	1 retrocopy	retro_shar_394,