RetrogeneDB ID:

retro_ogar_169

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873525.1:20898088..20901406(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000010992
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:IPO5
Ensembl ID:ENSOGAG00000007570
Aliases:None
Description:importin 5 [Source:HGNC Symbol;Acc:6402]


Retrocopy-Parental alignment summary:






>retro_ogar_169
ATGGCGGCGGCAGCATCTGCTGGGGTGCCGGCGACCGTGTCGGAAAAGCAAGAGTTTTACCAGCTTCTGAAGAACCTGAT
CAATCCAAGCTGTATGGTGCGCAGGCAAGCAGAGGAAGTCTATGAAAATATCCCAGGTCTGTGTAAGACTACATTCCTCT
TAGATGCCGTCAGAAATAGAAGAGCAGGTTATGAGGTGAGACAAATGGCTGCCGCACTGCTACGACGGCTTTTGTCCTCT
GGGTTTGAGGAGGTTTATCCAAATCTGCCTTCTGATATTCAGAGGGATGTCAAGATTGAACTGATACTGGCTGTTAAGTT
AGAAACACACGCTAGCATGAGGAAAAAACTTTGTGATATTTTTGCGGTGCTGGCCAGGAATTTGATAGATGAGGATGGCA
CTAACCACTGGCCAGAAGGTCTGAAGTTTCTTATTGATTCAATCTACTCTAAAAATGTGGTTCTATGGGAAGTTGCACTT
CACGTTTTCTGGCACTTTCCTGGGATTTTTGGGAACCAAGAGCGGCACGATTTGGATATCATCAAACGATTGTTGGACCA
GTGTATTCAAGATCAAGAACATCCAGCAATCAGGACTTTATCCGCTAGAGCTGCAGCTGCATTTGTACTTGCTAATGAGA
ATAATATTGCTCTTTTCAAAGACTTTGCAGACTTACTTCCAGGAATCTTACAGGCTGTGAATGACTCATGCTACCAGGAT
GATGATTCAGTCCTAGAATCCCTTGTTGAGATTGCAGATACAGTACCTAAGTACTTGGGTCCTTATTTAGAAGATACTCT
GCAATTGAGTCTGAAGTTATGTGGAGACTCTAGGCTTAGTAATCTGCAACGCCAGCTGGCTCTTGAAGTAATAGTGACTT
TGTCTGAAACTGCAACTCCAATGTTGAAAAAACATACAAATATTATTGCCCAGGCAATTCCTCATATATTAGCAATGATG
GTTGATCTGCAAGATGATGAGGACTGGGTAAATGCTGATGAAATGGAAGAAGATGATTTTGACAGCAATGCTGTTGCTGC
TGAGAGTGCACTAGACAGACTGGCTTGTGGGCTTGGCGGAAAAGTTGTTTTGCCAATGACCAAAGAACATATCATGCAGA
TGCTTCAGAGCCCTGACTGGAAATACCGACATGCTGGATTAATGGCCTTATCTGCTATTGGAGAAGGATGCCATCAGCAA
ATGGAATCAATTCTAGATGAAACAGTTAATTCTGTTTTGCTTTTTCTTCAGGATCCTCATCCAAGGGTAAGGGCTGCAGC
CTGTACTACACTTGGACAGATGGCTACAGATTTTGCACCTAATTTCCAAAAGAAATTCCATGAAACAGTGATTGCAGCTT
TGTTGCGTACCATGGAAAATCAAGGTAATCAGCGTGTGCAATCGCACGCAGCTTCTGCTCTTATTACTTTTATTGAAGAC
TGCCCCAAGTCATTGCTAGTTCTATATTTGGATAGTATGGTGAAAAATCTACATTCCATCTTGGTCATAAAACTTCAAGA
GTTAATTCGGAATGGAACTAAGTTGGCCTTGGAACAACTTGTGACAACCATTGCATCAGTTGCAGATACAATAGAAGAAA
AATTTCTTCCATATTATGATATATTTATGCCCTCACTAAAGCACATTGTTGAGCTTGCTGTTCAGAAGGAACTCAAGCTT
CTGAGAGGAAAAACTATTGAGTGCATTAGCCATGTTGGGCTTGCTGTTGGGAAGGAAAAATTTATGGAAGATGCATCAAA
TGTGATGCAGCTATTGTTGAAGACACAATCAGACTTAAACAATATGGAAGATGATGACTCTCAGACATCTTACATGGTTT
CAGCATGGGCTAGAATGTGTAAAATTCTTGGAAAAGATTTTCAACAATATCTTCCACTGGTTATCGAACCTCTTATTAAA
ACTGCTTCTGCTAAACCTGATATTGCTCTCTTAGATACACAAGATGTGGAAAATATGAGTGATGATGATGGCTGGCAATT
TGTAAATCTTGGAGACCAGCAAAGTTTTGGAATTAAAACTTCAGGACTTGAAGCAAAAGCAACTGCTTGCCAGATGTTGG
TTTACTATGCTAAGGAATTAAGGGAAGGATTTATGGAATATACTGAACAAGTTGTGAAGCTGATGGTTCCTTTACTGAAA
TTTTATTTCCATGATAATGTTCGAGTAGCAGCAGCAGAGTCTATGCCTTTTCTCTTGGAATGTGCAAAAATTCATGGCCC
AGAGTATCTTGGACAAATGTGGCAATTTATATGTGATCCCTTAATCAAGGCTATTGGTACTGAACCAGATACAGATGTAC
TCTCAGAAATAATGAATTCTTTTGCAAAGTCCATTGAAGTAATGGGAGATGGTTGCCTTAATGATGAACACTTGGAAGAA
CTGGGAAGCATATTGAAAGCAAAACTTGAAGGACACTTTAAAAACCAAGAATTGCGACAGGTTAAAAGGCAAGAAGAAAA
CTATGATCAACAGGTTGAGATGTCTCTGCAAGATGAAGATGAATGTGATGTATATATTCTTACCAAAGTATCAGATATTT
TGCACTCATTATTTAGTACTTACAAGGAAAAGATTTTGCCATGGTTTGAACAGCTACTTCCATTAATTGTAAATCTAATT
TGTTCAAGTAGGCCGTGGCCAGACAGACAGTGGGGATTGTGCATATTTGATGACATCATAGAGCACTGCAGTCCAACCTC
ATTTAAATATGTAGAATATTTTCGGTGGCCAATGCTGCTTAATATGCGAGATAACAACCCTGAAGTTAGGCAAGCTGCTG
CTTATGGCCTAGGAGTTATGGCCCAATTTGGTGGAGATGATTATCGTTCTTTATGTTCAGAAGCTGTTCCATTGCTTGTA
AAGGTTATTAAGTGTGCAAATTCCAAAACCAAAAAGAATGTCATTGCTACAGAGAACTGTATCTCAGCAATAGGGAAGAT
TTTGAAGTTCAAGCCTAACTGTGTAAATGTAGATGAAGTTCTTCCACACTGGTTATCATGGCTTCCACTGCATGAAGATA
AAGAGGAAGCTATTCAGACTTTGAGTTTTCTCTGTGACTTAATTGAAAGTAACCACCCTGTTGTAATTGGTCCAAATAAT
TCTAATCTTCCCAAAATAATCAGCATAATTGCAGAAGGAAAAATTAATGAGACTATTAACTATGAAGCTCCTTGTGCCAA
ACGCTTAGCTAATGTGGTGCGGCAGGTACAGACTTCTGAAGAATTATGGTTGGAATGCATATCCCAGCTTGATGATGAAC
AGCAGAAAGCCTTACAGGAATTGCTAAATTTTGCTTGA

ORF - retro_ogar_169 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.8 %
Parental protein coverage: 54.8 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalKKGTKLVLEQVVTSIASVADTAEEKFVPYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKE
..GTKL.LEQ.VT.IASVADT.EEKF.PYYD.FMPSLKHIVE.AVQKEL.LLRGKTIECIS..GLAVGKE
RetrocopyRNGTKLALEQLVTTIASVADTIEEKFLPYYDIFMPSLKHIVELAVQKELKLLRGKTIECISHVGLAVGKE
ParentalKFMQDASDVMQLLLKTQTDFNDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVA
KFM.DAS.VMQLLLKTQ.D.N.MEDDD.Q.SYM.SAWARMCKILGK.FQQYLP.V..PL.KTAS.KP..A
RetrocopyKFMEDASNVMQLLLKTQSDLNNMEDDDSQTSYMVSAWARMCKILGKDFQQYLPLVIEPLIKTASAKPDIA
ParentalLLDTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMVPLL
LLDTQD.ENMSDDDGW.FVNLGDQQSFGIKT.GLE.K.TACQMLV.YAKEL.EGF.EYTEQVVKLMVPLL
RetrocopyLLDTQDVENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELREGFMEYTEQVVKLMVPLL
ParentalKFYFHDEMKRVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSEIMHSFAKCIE
KFYFHD....VRVAAAESMP.LLECA...GPEYL.QMW.F.CD.LIKAIGTEPD.DVLSEIM.SFAK.IE
RetrocopyKFYFHDN---VRVAAAESMPFLLECAKIHGPEYLGQMWQFICDPLIKAIGTEPDTDVLSEIMNSFAKSIE
ParentalVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESLQDEDDNDVYILTKVSDILHS
VMGDGCLN.EH.EELG.ILKAKLE.HFKNQELRQVKRQ.E.YD.QVE.SLQDED..DVYILTKVSDILHS
RetrocopyVMGDGCLNDEHLEELGSILKAKLEGHFKNQELRQVKRQEENYDQQVEMSLQDEDECDVYILTKVSDILHS
ParentalIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIFDDIIEHCSPSSFKYAEYFLRPMLQYVCDNS
.FS.YKEK.LPWFEQLLPLIVNLIC..RPWPDRQWGLCIFDDIIEHCSP.SFKY.EYF..PML....DN.
RetrocopyLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKYVEYFRWPMLLNMRDNN
ParentalPEVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVN
PEVRQAAAYGLGVMAQ.GGD.YR..C.EA.PLLV.VI..A.SKTK.NV.ATENCISA.GKI.KFKP.CVN
RetrocopyPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSKTKKNVIATENCISAIGKILKFKPNCVN
ParentalVEEILPHWLSWLPLHEDKEEAVQTFSYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCA
V.E.LPHWLSWLPLHEDKEEA.QT.S.LCDLIESNHP.V.GPNN.NLPKI.SIIAEG...E.I..E.PCA
RetrocopyVDEVLPHWLSWLPLHEDKEEAIQTLSFLCDLIESNHPVVIGPNNSNLPKIISIIAEGKINETINYEAPCA
ParentalKRLANVVRQVQTSGGLWTECIAQLSPEQQAAIQELLNSA
KRLANVVRQVQTS..LW.ECI.QL..EQQ.A.QELLN.A
RetrocopyKRLANVVRQVQTSEELWLECISQLDDEQQKALQELLNFA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_169 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 25 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000037841 retrocopy
retro_amel_3,
Bos taurus ENSBTAG000000393741 retrocopy
retro_btau_104,
Canis familiaris ENSCAFG000000055611 retrocopy
retro_cfam_452,
Choloepus hoffmanni ENSCHOG000000060611 retrocopy
retro_chof_11,
Cavia porcellus ENSCPOG000000048272 retrocopies
retro_cpor_265, retro_cpor_57,
Equus caballus ENSECAG000000148081 retrocopy
retro_ecab_37,
Felis catus ENSFCAG000000256571 retrocopy
retro_fcat_24,
Homo sapiens ENSG000000651501 retrocopy
retro_hsap_57,
Gorilla gorilla ENSGGOG000000087421 retrocopy
retro_ggor_47,
Loxodonta africana ENSLAFG000000161901 retrocopy
retro_lafr_22,
Myotis lucifugus ENSMLUG000000065001 retrocopy
retro_mluc_295,
Mus musculus ENSMUSG000000306622 retrocopies
retro_mmus_251, retro_mmus_3683,
Nomascus leucogenys ENSNLEG000000078312 retrocopies
retro_nleu_1610, retro_nleu_2482,
Oryctolagus cuniculus ENSOCUG000000038981 retrocopy
retro_ocun_143,
Otolemur garnettii ENSOGAG00000007570 1 retrocopy
retro_ogar_169 ,
Pongo abelii ENSPPYG000000054581 retrocopy
retro_pabe_172,
Pan troglodytes ENSPTRG000000059842 retrocopies
retro_ptro_49, retro_ptro_745,
Pteropus vampyrus ENSPVAG000000045161 retrocopy
retro_pvam_8,
Rattus norvegicus ENSRNOG000000109891 retrocopy
retro_rnor_240,
Sus scrofa ENSSSCG000000095091 retrocopy
retro_sscr_24,
Ictidomys tridecemlineatus ENSSTOG000000111641 retrocopy
retro_itri_32,


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