RetrogeneDB ID:

retro_ogar_2139

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873595.1:7063524..7064013(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000027846
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:DAZAP2
Ensembl ID:ENSOGAG00000007977
Aliases:None
Description:DAZ associated protein 2 [Source:HGNC Symbol;Acc:2684]


Retrocopy-Parental alignment summary:






>retro_ogar_2139
ATGAACAGCAAAGGTCAACATCCAACACAGCCAACCTACCCTGTACAGCCTCCTGGGAATCCAATATACCCTGAGACCTT
GCATCTTCCTCAGGCTCCACCCTCTACTGATGTTCCGCCTGTCTACACAGAGCTCCATCGTCAGAACCGATGGCAACCCG
GGGGCTGCCACAGTCCCACCATGTCAGCTGCATTTCCTGGCTCCTCTCTGTATCTTCCCATGGCTCAGTCTGTGGCCATT
GGGCCTTCAGGTTCCATAATCTCTAAGGCTTATTATCCAGTTGGTTCCATCTAACCACTTGGTTCAACTGTGCTGGTAGG
AGGTTATGATGCAGGTGCCAGATTTAGAGCTGGGGCTACTGCTGGCAACACCCCTCCTCCACCTCCTGGATGCCCTCCCA
ATGCTGCTCAGCTTGCGGTCATGCAGGGAGCCAATGGCCTTGTAACTCAGATGAAGGGGAACTTCATGGATAGTTCAGAC
GGTGGCTAT

ORF - retro_ogar_2139 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.79 %
Parental protein coverage: 98.21 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPTMSAAFPGASL
MNSKGQ.PTQPTYPVQPPGNP.YP.TLHLPQAPP.TD.PP.Y.EL.R.....PG....PTMSAAFPG.SL
RetrocopyMNSKGQHPTQPTYPVQPPGNPIYPETLHLPQAPPSTDVPPVYTELHRQNRWQPGGCHSPTMSAAFPGSSL
ParentalYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGATAGSIPPPPPGCPPNAAQLA
YLPMAQSVA.GP.GS.I..AYYPVG.I.P.GSTVLV.GGYDAGARF.AGATAG..PPPPPGCPPNAAQLA
RetrocopyYLPMAQSVAIGPSGSIISKAYYPVGSI*PLGSTVLV-GGYDAGARFRAGATAGNTPPPPPGCPPNAAQLA
ParentalVMQGANVLVTQRKGNFFMGGSDGGY
VMQGAN.LVTQ.KGN.FM..SDGGY
RetrocopyVMQGANGLVTQMKGN-FMDSSDGGY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2139 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000176612 retrocopies
Homo sapiens ENSG000001832831 retrocopy
Gorilla gorilla ENSGGOG000000268611 retrocopy
Myotis lucifugus ENSMLUG000000099591 retrocopy
Macaca mulatta ENSMMUG000000018841 retrocopy
Nomascus leucogenys ENSNLEG000000177761 retrocopy
Otolemur garnettii ENSOGAG00000007977 3 retrocopies
retro_ogar_2109, retro_ogar_2139 , retro_ogar_3130,
Pongo abelii ENSPPYG000000045241 retrocopy



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