RetrogeneDB ID: | retro_ogar_2301 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873610.1:6498525..6499087(+) | ||
Located in intron of: | ENSOGAG00000028005 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPR | ||
Ensembl ID: | ENSOGAG00000012959 | ||
Aliases: | None | ||
Description: | sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) [Source:HGNC Symbol;Acc:11257] |
Percent Identity: | 75. % |
Parental protein coverage: | 69.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GRPGLRVVGVSA-DLGTEAGLQQLLGALHKLSRPEGLQRLLLINNAGSLGDVSKGFVDLCDPAEVNNYWA |
GRP.L.V....A..L.TEA.LQQLLGAL.K..R...L.RLLLINNAG.L.DVSKGFVDLCDPAEVNNYW. | |
Retrocopy | GRPELPVNSEGACHLSTEASLQQLLGALYKQPRLKKL*RLLLINNAGTLVDVSKGFVDLCDPAEVNNYWV |
Parental | LNLTSTLCLTSGILKAFQDSPDLSRTVVNISSLCALQPFKGWALYCAGKAARNMMFQVLAAEEPGVRVLS |
LNLTS.LCLTSGILKAF.D.P.LSRT.V.ISSLC.LQPFKGWALY...KA..NM.FQVL.AEEPGV.VLS | |
Retrocopy | LNLTSMLCLTSGILKAFWDYPGLSRTMVDISSLCTLQPFKGWALYSSRKAVPNMIFQVLTAEEPGVWVLS |
Parental | YAPGPLDTDMQQLARETSVDPDL-RKRLQKLKTSGELVDCRVSAQKLL |
YAPG.LDT.MQQLA.ETS..PDL..KRLQ.LKTSG.L..CRVSAQK.L | |
Retrocopy | YAPGLLDTGMQQLAQETSANPDL>EKRLQ*LKTSGQLMACRVSAQKML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Otolemur garnettii | ENSOGAG00000012959 | 1 retrocopy |
retro_ogar_2301 ,
|
Pelodiscus sinensis | ENSPSIG00000013998 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000016383 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008309 | 1 retrocopy |