RetrogeneDB ID: retro_ogar_234

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873685.1:3589722..3590361(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000027978
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000004771
• Aliases: None
• Description: None

Sequence

>retro_ogar_234
ATGAGCGGAACTCTGGAAAAGGTGCTGTGCCTGAGGAACAATATCATTATTAAGCAAGCCTTTTCCTTCCTAAGGTTTAG
AACTTCAGGAGAGAATCCCATCTATTCTTCAGGTGGCATTCTGCTGGGTACCTGTCGGCACTACAAGACAAAGCCCACCC
ATGGTATCGGAAGATACAAGCACCTAATTAAAGCACAAGAGCCCAAGAAGAAGAAGACAAAAGTGGAAGTGAGATCCATT
AATTTGGGGACAGATTATGAATATGGTGTTTTAAACATTCACCTGACTGCATATGACATGACCCTGGCAGAAAGTTATGC
CCAGTATGTTCACAATCTCTGCAACCAACTCTCCATTAAAGTCGAGGAAAGCTATGCGATGCCTACCAAAACCATGGAGG
TGTTGCGGCTGCCAGACCAAGGCAACAAAATGGTCCTGGACTCAGTCCTTACCACCCATGAACGAGTGGTTCAGATCAGT
GGTTTGACTGCTACATTTGCAGAGATTTTTCTGGAAATAATCCAAAGCAATCTTCCTGAAGGAGTCAGATTGCTAGTGAA
GGAGCACACTGAAGAAGACTTCAAGGGACGGTTCAAAGCTCGGCCAGAACTGGAAGAACTGTTGGCCAAGCTTAACTAG

Alignment

ORF - retro_ogar_234 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.31 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PKKKKTKVEVRSINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNQLSIKVEESYAMPTKTMEVLRL
          PKKKKTKVEVRSINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNQLSIKVEESYAMPTKTMEVLRL
Retrocopy PKKKKTKVEVRSINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNQLSIKVEESYAMPTKTMEVLRL

Parental  PDQGNKMVLDSVLTTHERVVQISGLSATFAEIFLEIIQSNLPEGVRLLVKEHTEEDFKGRFKARPELEEL
          PDQGNKMVLDSVLTTHERVVQISGL.ATFAEIFLEIIQSNLPEGVRLLVKEHTEEDFKGRFKARPELEEL
Retrocopy PDQGNKMVLDSVLTTHERVVQISGLTATFAEIFLEIIQSNLPEGVRLLVKEHTEEDFKGRFKARPELEEL

Parental  LAKLN
          LAKLN
Retrocopy LAKLN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_234 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000005585	1 retrocopy	retro_cfam_1437,
Choloepus hoffmanni	ENSCHOG00000003662	1 retrocopy	retro_chof_2664,
Homo sapiens	ENSG00000175581	1 retrocopy	retro_hsap_3557,
Mustela putorius furo	ENSMPUG00000009716	1 retrocopy	retro_mputfur_38,
Mus musculus	ENSMUSG00000030706	2 retrocopies	retro_mmus_2478, retro_mmus_563,
Nomascus leucogenys	ENSNLEG00000017097	1 retrocopy	retro_nleu_1376,
Oryctolagus cuniculus	ENSOCUG00000009302	1 retrocopy	retro_ocun_39,
Otolemur garnettii	ENSOGAG00000004771	1 retrocopy	retro_ogar_234 ,
Pan troglodytes	ENSPTRG00000004049	1 retrocopy	retro_ptro_2417,
Tursiops truncatus	ENSTTRG00000005403	2 retrocopies	retro_ttru_1123, retro_ttru_297,
Vicugna pacos	ENSVPAG00000004657	1 retrocopy	retro_vpac_538,