>retro_ogar_2388
ATGGCTGCCAGGCTGATCTCCGAGCAGAACCAGGATGCCACCATATACATGGGGGGTCTGGATGAGAAGGTTAGTGAACC
ACTGCTGTGGGAACTATTTCTTCAGGCTGGACCGGTAGTCAACACCCACGTGCCAAAGGATAGGGTCACAGGCCAGCACC
AAGGATATGGTTTTGTGGAATTCCTGAGCAAAGAAGATGCTGACTATGCCATTAAGATCATGAACATGATCAAACTCTAT
GGGAAACCAATATGTGTGAACAGGGCATCAGTTTACAACAAAAACCTGAATGTAGGGGCCAACATTTTCATTGGGAACCT
GGACCCAGAGAGTAATGAAAGCTGCTTTATGATACTTTCAGCACCTTTGAGTCATCTTACAACCCCCCCAAGATTATGTG
GGACTCTAACACAGGCAACTCCAAGGGTTATCCTTTTATTAATTTTATTTTGTTTGGTGCTTCAGATGCAGCAATTGAGG
CTATGAATGGTCAGTACCTTTGTAACCACCTAATCACTGTGTCTAATGCCTTCAAGAAGGACTCTTAAGGGTGAGTGCCA
TGGCTCAGTAGCTGAACAACTTCTGGCAGCTCAGAACTCACTCTCCCAGGCTGACAACTCCCATCAGCTATTTGCAGGTG
CACATCCTTCACCTTCTGCCCCTAATCTGGTGGTATCATCATTGGGATCTGGGCTCCCATGACCAGGCATGCCTCCTCCT
GGCTCCTTCCCAACTCCAGTGCCACCTCCTGGAACCGTCTCACCTGGGATACCCCCAGCCATGCCTCTGCCACCTATGCC
TTCCATGACTGAAAGACATGCCCCCCCCATCAGCAGGAACCCCAGGAGCAGGACATTCTAGTCACAGACCCTCACATCCT
CATCCATTTCCAAAGGGTCATCCAGTGATGGCTCAGATGTAACCGGCACACCATGGCCCTCATGGCTTAGGATACCCCCA
TGTGGGGCCCCCAGCCTCTTGGGGACAGCTAACACCTTGAACGCCTCATCCTAAACCTCCTGCAATGGGCATGCCCCCCA
CCCAAGGGCCTCCAATTGAGCCTCCCATGGGCCACCCAGGTCTTATGCCCCCACATGGTATGCATGGACCTCCTCCACTG
ATTTCCCCTCATGGATACACTGGCCGTCTATTACCCCCACCCTATGGCTACCAGAGGCGACCTCTCCCGGCCTCTAGTTC
CCCCTTGTAGCCTGCTCCACGGCCC
ORF - retro_ogar_2388 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.12 % |
Parental protein coverage: |
96.7 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA |
| MAA..ISE.NQDAT.Y.GGLDEKVSEPLLWELFLQAGPVVNTH.PKDRVTGQHQGYGFVEFLS.EDADYA |
Retrocopy | MAARLISEQNQDATIYMGGLDEKVSEPLLWELFLQAGPVVNTHVPKDRVTGQHQGYGFVEFLSKEDADYA |
|
Parental | IKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDE-KLLYDTFSAFGVILQTPKIMRDPDTG |
| IKIMNMIKLYGKPI.VN.AS..NKNL.VGANIFIGNLDPE..E.KLLYDTFS.F......PKIM.D..TG |
Retrocopy | IKIMNMIKLYGKPICVNRASVYNKNLNVGANIFIGNLDPESNE<KLLYDTFSTFESSYNPPKIMWDSNTG |
|
Parental | NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS-KGERHGSAAERLLAAQNPLSQADRPH |
| NSKGY.FINF..F.ASDAAIEAMNGQYLCN..ITVS.AFKKDS.KGE.HGS.AE.LLAAQN.LSQAD..H |
Retrocopy | NSKGYPFINFILFGASDAAIEAMNGQYLCNHLITVSNAFKKDS>KGECHGSVAEQLLAAQNSLSQADNSH |
|
Parental | QLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAGGH-GPPS |
| QLFA.A.P.PSAPN.VVSSLGSGLP.PGMPPPGSFP.PVPPPG...PGIPPAMP.PPMP.....H....S |
Retrocopy | QLFAGAHPSPSAPNLVVSSLGSGLP*PGMPPPGSFPTPVPPPGTVSPGIPPAMPLPPMPSMTERH>XXXS |
|
Parental | AGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPP |
| AGTPGAGH..H..SHPHPFP.G...HP.M.QM..AHHGPHGLG.PH.GPP.S.GQ..P..P....HP.PP |
Retrocopy | AGTPGAGHSSHRPSHPHPFPKG---HPVMAQM*PAHHGPHGLGYPHVGPPASWGQLTP*TP----HPKPP |
|
Parental | PMGMPP-RGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLP----PPRPTPRP |
| .MGMPP..GPP...PMGHPG.MPPHGM.GPPPL..PHGYTG...PPPYGYQR.PLP....P..P.PRP |
Retrocopy | AMGMPPTQGPPIEPPMGHPGLMPPHGMHGPPPLISPHGYTGRLLPPPYGYQRRPLPASSSPL*PAPRP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2388 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
8 retrocopies.