>retro_ogar_2765
GACTGGGGGCGTTTGCCTCCCGTGTAGCACTACAGATGTTTCAGTGTCTTCCTTCAATAGACTGGGCCTGTGCATCTTCT
GTATGTAGGAGACGGAATGAAGTTTTTCATGTTACTGACCTTCGGAGAAAGTTCGAATTTGAGCTGAACCAGTCAGCTAC
TTCATATTTTAAGTCCACTCACCCTGATCTCATTCAGCAGATTATTAAAAATCATGCTGCCCATCTCCAATACATCAGTT
TTAAGGCTGACAGTTGTACGAAGTCAGCAGAAGCTGCCTGTGTTATTCTTCCTCAGCTGGTAAACTGTTCTAACCACACC
TAGGGTTTGATTTGAACAGCCAAGCTGAGTTTTATGAATGTGTCAAAGTCTCATTTTGTGTCAGTGCTTATATGGTTGTC
TGTGTCAACTCAAAATTGTTATTGTCAATCAAAATTGCACACATACCAGTGGATGATGCTTCATTGAAGATTCTTGTGGC
TAACGACAGTGACACTCTAAAACTCCTAAAAACGACTAGCTGTCCTCATGTTTCATCTCATGGAATCCTTTGTGTAGCTG
ATTACTGTCAAGGCCTTAGAGAACTGGCATTGAATTACTACATTCTAAGTCTTGAACTTCTAGCACTTTAAAGTAAGACT
CATGTTAACCTTGAACATCTTTGAATTGATGTTGTGAGTGAAAATCCTGGCCAGGTTGAATTTCCTTCTCTTATAAAAAA
TAGTTGGGATGTACCTATTAAACAGTCCCCTAGAGCTAATGTTGTTATGTACTTCTTTTTATATGAAGTGAATTTGAGAC
ATTCTTCAAAGAAGAAACTCCTGTTACTCAGCTCTGTTTTGGA
ORF - retro_ogar_2765 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
63.64 % |
Parental protein coverage: |
65.89 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | DWGNL-LQDIILQIFKYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPELIKQII |
| DWG.L......LQ.F..LP..D.A.AS.VCR..N.VFH..DL.R.FEFELNQ.ATSY.K.THP.LI.QII |
Retrocopy | DWGRL<ASRVALQMFQCLPSIDWACASSVCRRRNEVFHVTDLRRKFEFELNQSATSYFKSTHPDLIQQII |
|
Parental | KRHSNHLQYVSFKVDSSKESAEAACDILSQLVNCSLKTLGLISTARPS-FMDLPKSHF-ISALTVVFVNS |
| K.H..HLQY.SFK.DS...SAEAAC.IL.QLVNCS..T.GLI.TA..S.F....K..F..SA..VV.VNS |
Retrocopy | KNHAAHLQYISFKADSCTKSAEAACVILPQLVNCSNHT*GLI*TAKLS<FYECVKVSFCVSAYMVVCVNS |
|
Parental | KSLSSLKIDDTPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDELL |
| K.L.S.KI...PVDD.SLK.LVAN.SDTLKLLK..SCPHVS..GILCVAD.C.GLRELALNY..LS.E.L |
Retrocopy | KLLLSIKIAHIPVDDASLKILVANDSDTLKLLKTTSCPHVSSHGILCVADYCQGLRELALNYYILSLE-L |
|
Parental | LALSSEKHVRLEHLRIDIVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFFLYE-EEFDPFFRYEIPA |
| LAL.S..HV.LEHL.ID.VSENPGQ..F....K.SWD..I..SP..N.VMYFFLYE..EF..FF..E.P. |
Retrocopy | LAL*SKTHVNLEHL*IDVVSENPGQVEFPSLIKNSWDVPIKQSPRANVVMYFFLYE<SEFETFFKEETPV |
|
Parental | THLYFG |
| T.L.FG |
Retrocopy | TQLCFG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2765 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
4 retrocopies.