RetrogeneDB ID: | retro_ogar_2886 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873676.1:2904350..2904833(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOGAG00000002879 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.85 % |
Parental protein coverage: | 60.98 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | YRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDEWGIKVERVE |
Y.VQNATL.VANI.N.DS.T.LL.QT.L.N.LG.KNLSQILSDREEIAHNMQCTLDD.TD.W..KV.RVE | |
Retrocopy | YLVQNATLVVANISNLDSGTCLLTQTPLKNILGSKNLSQILSDREEIAHNMQCTLDDTTDDWVMKV*RVE |
Parental | IKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVITESP-AALQLRYLQTLTTIAAE |
IKD.KLPV.LQRAMAAEAEA...ARA.VIAA.G.MNAS.ALK.AS..ITESP..AL.LR.L.TLTTIAAE | |
Retrocopy | IKDMKLPVLLQRAMAAEAEAY*GARATVIAADGKMNASMALKGASVIITESP>VAL*LR*L*TLTTIAAE |
Parental | KNSTIVFPL-PIDMLQGIIGAKH |
KNS.IVFPL.....LQGII.A.H | |
Retrocopy | KNSRIVFPL<AYGILQGIIEAIH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000015723 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017145 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002879 | 2 retrocopies |
retro_ogar_2886 , retro_ogar_291,
|
Oreochromis niloticus | ENSONIG00000013021 | 1 retrocopy |