RetrogeneDB ID: | retro_ogar_2992 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873693.1:746450..747238(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOGAG00000001879 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.49 % |
Parental protein coverage: | 68.99 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPDGLFYEFEGRKYCEHDFQMLFAP |
NMANALA.ATCE.C.GGF.PA.KI.NSN.ELYHEQCFVCAQCFQQFP.GLFYE.EGRKYCEHDFQ.LF.P | |
Retrocopy | NMANALARATCELCRGGFVPAKKILNSNRELYHEQCFVCAQCFQQFPEGLFYESEGRKYCEHDFQLLFVP |
Parental | CCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNR-EKARGLGKYICQKC |
CCH.CG.FIIG.V.KA.NN.....CF.CDLCQE.LAD.GFVKNAGRHLC..CH...EKARGLGK.IC.KC | |
Retrocopy | CCH*CGKFIIG*VTKATNN----HCFCCDLCQEILADTGFVKNAGRHLCCSCHKL<EKARGLGKHICWKC |
Parental | HAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAM |
HAI.DEQPLIFK.DPYH.DHFNCA.C.KEL..D...LKGEL.CL..HD..GV.ICG.C..PIE..VVN.M | |
Retrocopy | HAIVDEQPLIFKSDPYHSDHFNCASCRKELMYDTWHLKGELCCLLDHDEWGVSICGICSWPIEWCVVNPM |
Parental | GKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSA |
GKQWH.E.FVCAKCEKPFLGH.HYERK.LAYC..HYNQLFG.VC.HCN.VIEG.VVSA | |
Retrocopy | GKQWHAEDFVCAKCEKPFLGHCHYERKDLAYCKIHYNQLFGNVCLHCNYVIEGYVVSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013902 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004334 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001879 | 1 retrocopy |
retro_ogar_2992 ,
|
Rattus norvegicus | ENSRNOG00000037765 | 1 retrocopy |