>retro_ogar_334
GTGGTAGAGATGCAAGGAGATGAAATGACACGGATCATCTGGGAATTGATAAAAGAAAAACTCATTTTTCCCTATGTGGA
ACTGGATCTACATAGCTATGATTTAGGCATAGAGAATTGTGATGCCACCAGCAACCAAGTCACCAAGGATGCTGCAGAGG
CCATAAAAAAATACAACGTAGGGGTCAAGTGTGCTACTATCACCCCGATGAGAAGAGGGTTGAGTAGTTCAAGTTGAAAC
AAATGTGGAAATCACCGAACGGCACCATCCAAAATATTCTATGTGGCACTGTCTTCAGGGAAGCTATTATCTGCAAAAAT
ATCCCCCGGCTTGAGAGTGGATGGGTGAAACCCATCATCATAGGTCATCACGCTTATGGGGACCAATACAGAGCAACTGA
TTTTGTTGTTCCTGGGCCTGGAAAAGTAGAGATAACCTACACACCAAATGATGGAACCCAAAAGGTGACATACTTGGTAC
ATAACTTTGAAGATGGTGGTGGTGTTGCCATGGGTATGTACATTTAAGATAAGTCAATCCAAGATTTTGCACACAGTTCT
TTCCAAATGGCTCTGTCTAAGGGTTGACCTTTGTATCTGAGCACCAAAAGCACTATTCTGAAGAAATATGATGGACGTTT
TAAAGACATCTTTCAGGAGATATATGACAAGCAGTACAAATCCCAATTTGAAGCCCAGAAGATCTGGTATGAACATAGGC
TCATCGATGACACGGTGGCCCAAGCCACCAGAAATCAGAAGGAAGCTTCATTTGGGCCTGCAAAAACTATGATGGTGACG
TGCAGTCGGACTCTGTGGCCCAAGGTTATGGTTCTCTTGGCATGATGACCAGTGTGCTGGTTTGTCCAGATGGCAAAACA
GTAGAAGCAGAGGCAGCCCATGGGACCGTAACCCATCACAACCGCATGTACCAGAAAGGACAGGAGACATCCACTCATCC
CATTGCTTCCATTTCTGCCTGGACCAGAGGATTAGCCCACAGAGCAAAGCTTGATAACAATAAAGAACTTGACCTCTTTG
CAAAGGCTTTGGAAGAAGTCTGTATTGAGACCATTGAGGCTGGCTTCATGACCAAGGACTTGGCTATTTGCATTAAAGGT
TTACCTAACGTGCAACGTTCTGACTACTTGAATACATTTGAATTCATGGACAAACTTGGAGAAAACTTGAAGATAAAGCT
GGCCCAG
ORF - retro_ogar_334 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
65.76 % |
Parental protein coverage: |
88.94 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYHVAVKCATITP- |
| VVEM.GDEMTRIIW..IKEKLI.P.V...L...DLG..N.D.T..QVT.D.A.A..KY.V.VKCATITP. |
Retrocopy | VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENCDATSNQVTKDAAEAIKKYNVGVKCATITP< |
|
Parental | DEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADR |
| DE.RVE.FKLK.MWKSPNGTI.NIL.GTVFRE.IICKNIPRL..GW.KPI.IG.HA.GDQY.ATDFV... |
Retrocopy | DEKRVE*FKLKQMWKSPNGTIQNILCGTVFREAIICKNIPRLESGWVKPIIIGHHAYGDQYRATDFVVPG |
|
Parental | AGTFKMVFTPKDGSGVKEWEVYNF-PAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKA |
| .G......TP.DG.......V.NF...GGV.MGMY..D.SI..FAHS.FQ.A..K..PLY.STK.TILK. |
Retrocopy | PGKVEITYTPNDGTQKVTYLVHNFEDGGGVAMGMYI*DKSIQDFAHSSFQMALSKG*PLYLSTKSTILKK |
|
Parental | YDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKS-SGG-FVWACKNYDGDVQSDILAQGFG |
| YDGRFKDIFQEI.DK.YK..F...KIWYEHRLIDD.VAQ.....S.G.F.WACKNYDGDVQSD..AQG.G |
Retrocopy | YDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDTVAQATRN<SEGSFIWACKNYDGDVQSDSVAQGYG |
|
Parental | SLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFA |
| SLG.MTSVLVCPDGKT.EAEAAHGTVT.H.R..QKG..TST.PIASI.AWTRGL.HR.KLD.N..L..FA |
Retrocopy | SLGMMTSVLVCPDGKTVEAEAAHGTVTHHNRMYQKGQETSTHPIASISAWTRGLAHRAKLDNNKELDLFA |
|
Parental | QTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKANLDSALGR |
| ..LE.VC.ET.E.G.MTKDLA.CI.GL.NV......LNT..F.D....NL...L.. |
Retrocopy | KALEEVCIETIEAGFMTKDLAICIKGLPNVQRSD-YLNTFEFMDKLGENLKIKLAQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_334 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
7 retrocopies.