RetrogeneDB ID: | retro_ogar_1488 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873549.1:10692607..10693418(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IDH1 | ||
Ensembl ID: | ENSOGAG00000014848 | ||
Aliases: | None | ||
Description: | isocitrate dehydrogenase 1 (NADP+), soluble [Source:HGNC Symbol;Acc:5382] |
Percent Identity: | 88.56 % |
Parental protein coverage: | 65.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATSDQVTKDAAE-AIKKYNVGVKCA |
SGGSVVEMQGDEMT.I.WEL.KEKLIFP.VELDLHS.DLGI..RDAT.DQVTKD.AE.....YNVGVKCA | |
Retrocopy | SGGSVVEMQGDEMTQINWELMKEKLIFPFVELDLHSCDLGIKKRDATTDQVTKDVAE>SXXXYNVGVKCA |
Parental | TITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDF |
TITPDEKRVEEFKLKQMWKSPN.TIRNILG.TVFR.AIICKNIP.LVSGWVKPIIIGRHAYG.QYRATDF | |
Retrocopy | TITPDEKRVEEFKLKQMWKSPNSTIRNILGVTVFRKAIICKNIPQLVSGWVKPIIIGRHAYGYQYRATDF |
Parental | VVPGPGKVEITYTPNDGTQKVTYLVHNFEDGGGVAMGMYNQDKSIQDFAHSSFQMALSKSWPLYLSTKNT |
VVPG.GKVE.TY.PNDGTQKVTYLVHNFEDGGGVAMG.YNQDKSIQDFAHSSFQ..LSK.WPLYLSTKNT | |
Retrocopy | VVPGSGKVETTYIPNDGTQKVTYLVHNFEDGGGVAMGVYNQDKSIQDFAHSSFQNTLSKGWPLYLSTKNT |
Parental | ILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGD |
ILKKYDG.FKDIFQEIYDKQYKSQFEAQKI.YEHRLI.DMVAQA.KSEGGFIWACKNYD.D | |
Retrocopy | ILKKYDGHFKDIFQEIYDKQYKSQFEAQKIRYEHRLINDMVAQAIKSEGGFIWACKNYDSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020527 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004574 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013587 | 1 retrocopy | |
Homo sapiens | ENSG00000138413 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012619 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009797 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016077 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007143 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000014848 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000034936 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013125 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012865 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000023264 | 1 retrocopy |