>retro_ogar_3490
AGGTTAAAGTATCAGCATTTAATAACAAATAGTTATGTAGAGTGCAATCAGCTATTAAAATTGTGTCCTGCCCCAAATTC
TCATCATATTGTCAAAGTTAATATCCTGATGCTAAGCCTGTTTGCTGCAAATGTGGGCACCAATTCTGCTTTAACTGTGG
AGAAAATTGGCATAATCCTGTTAAATGTAAGTGGGTAAAGAAGTGGATTAAAAACTGTGATGACAGTGAAACTTCCAATT
GGATTGCAGCCAACACAAAGGAATGTCCCAAATGCCATGTCACAATTTAAAAGGATGGCAGTTGTAATCACATGGTCTGT
TGTAACCAGAACTATAAAGCCAAGTTTTGTTGGGTGTGTCTTGGCCCTTGGGAACCACATGGATCTGCCTGGTACAACTG
TAACTATTATAAAGAGGAAGATGCAAAGGCAGCAAGAGAAGCACAGGAGCGATCTAGGGCAGCCTGGCAGAGGTACCTGT
TCGCCTGTAATCACTATATGAACCACATGCAGAGTCTGGGCTTTGAGCACAAACTGTATGCTCAGGTGAAGCAGAAAATG
GAAGAAATGCAACCGCACAACATGTCCCAGATTGACGTGCAGTCCCTGAAGAAAGTAGTTGATGTCCTCTGTCAGTGTTG
TGCCACACTCATGTACATATATGTCTTCACTTTCTACCTCAAAAAGAACAACCAGTCTATTATCTTTGAGAATAACTAAG
CAGATCTAGAGAATGCCACAGAGCTGCTTTTGGGCTACTTTGAACAAGATATTTCCCAAGATTCACTGCAGGATCTATAG
CAGAAAGTACAAGGTAACTACAGATACTGTGAGAGTCAATGGAGGGTTTTGTTACAACATGTACACGAAGACTATGAAAA
AGATCTGTGGGAGTACACTGAGGAC
ORF - retro_ogar_3490 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.88 % |
Parental protein coverage: |
54.5 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | KLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQ-YPDAKPVRCKCGRQFCFNCGENWHDPVKCKWLKKW |
| .LKYQHLITNS.VECN.LLK.CPAP..HH.VKV..YPDAKPV.CKCG.QFCFNCGENWH.PVKCKW.KKW |
Retrocopy | RLKYQHLITNSYVECNQLLKLCPAPNSHHIVKVN<YPDAKPVCCKCGHQFCFNCGENWHNPVKCKWVKKW |
|
Parental | IKKCDDDSETSNWIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYN |
| IK.C.DDSETSNWIAANTKECPKCHVTI.KDG.CNHMVC.NQN.KA.FCWVCLGPWEPHGSAWYNCN.Y. |
Retrocopy | IKNC-DDSETSNWIAANTKECPKCHVTI*KDGSCNHMVCCNQNYKAKFCWVCLGPWEPHGSAWYNCNYYK |
|
Parental | EDDAKAARDAQERSRAALQRYLFYCNRYMNHMQSLRFEHKLYAQVKQKMEEMQQHNMSWIEVQFLKKAVD |
| E.DAKAAR.AQERSRAA.QRYLF.CN.YMNHMQSL.FEHKLYAQVKQKMEEMQ.HNMS.I.VQ.LKK.VD |
Retrocopy | EEDAKAAREAQERSRAAWQRYLFACNHYMNHMQSLGFEHKLYAQVKQKMEEMQPHNMSQIDVQSLKKVVD |
|
Parental | VLCQCRATLMYTYVFAFYLKKNNQSIIFENNQADLENATEVLSGYLERDISQDSLQDIKQKVQDKYRYCE |
| VLCQC.ATLMY.YVF.FYLKKNNQSIIFENN.ADLENATE.L.GY.E.DISQDSLQD..QKVQ..YRYCE |
Retrocopy | VLCQCCATLMYIYVFTFYLKKNNQSIIFENN*ADLENATELLLGYFEQDISQDSLQDL*QKVQGNYRYCE |
|
Parental | SRRRVLLQHVHEGYEKDLWEYIED |
| S..RVLLQHVHE.YEKDLWEY.ED |
Retrocopy | SQWRVLLQHVHEDYEKDLWEYTED |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3490 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.