RetrogeneDB ID: | retro_ogar_621 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873524.1:15149678..15150434(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RFFL | ||
Ensembl ID: | ENSOGAG00000024777 | ||
Aliases: | None | ||
Description: | ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:24821] |
Percent Identity: | 72.69 % |
Parental protein coverage: | 70.17 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MWATCCNWFCLDGQPDEGPPP-QGARTQAYSNPGYSSFPSP-TGSEPSCKGCGAHFANTARKQICLDCKK |
MWATC.NWFCL..Q..EGPPP.QGARTQ.....G...F....T.SEPSC..CGA..ANTARKQICLD..K | |
Retrocopy | MWATCYNWFCLNRQSKEGPPP<QGARTQGVPTLGIALFLLQ*T*SEPSCRACGAPLANTARKQICLDGDK |
Parental | NFCMTCSSQEGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDISTETCREKEELVFLVLGQQP |
NFCMTC.SQEGNGP.LCLLCQRF..TAFQ.EELMKM.VKD.RDYLSL.DIST..C..KEELVFL.LGQQP | |
Retrocopy | NFCMTCPSQEGNGPHLCLLCQRFGTTAFQPEELMKM-VKD*RDYLSLYDISTKMCLKKEELVFLELGQQP |
Parental | IISQEDRTRAPT-LSPDFPEQQAFLSQLHTSMVPPTSPSASSSAQATSVPP-AQAPEHQQANGHVSQDY- |
.IS..D....PT.LS.DFPEQQAFLSQLHTS...PTSPS.SSSAQATSVP..AQA.EH.QANGHVSQD.. | |
Retrocopy | TISR-DGPGSPT>LSLDFPEQQAFLSQLHTSTMAPTSPSPSSSAQATSVPE<AQAQEHHQANGHVSQDH< |
Parental | EESVYLESTARAPAEDETQSIDSEDSFV-PGRRASLSDLTDLEDIEGLTV |
..S.YL..TARAPAED..QS.DSEDSF....RRASLSDLT.LEDIE.LTV | |
Retrocopy | QKSIYLANTARAPAEDNSQSTDSEDSFI<LSRRASLSDLTYLEDIEALTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001950 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000012628 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024777 | 1 retrocopy |
retro_ogar_621 ,
|
Ochotona princeps | ENSOPRG00000011769 | 1 retrocopy |