RetrogeneDB ID: retro_ogar_902

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873530.1:19675965..19676698(+)
• Located in intron of: ENSOGAG00000014224

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000015479
• Aliases: None
• Description: None

Sequence

>retro_ogar_902
CTGAATTCTGAATTAGTGCATAGTGCAGTAGGAAGCTATCTTAAGCCTCCAGAAAGAGTGTTGTTCCATCATTCACCCAA
AATGAATCATCTCAGACTTGCCAACCCAAGAACTTAGACTAAGTCACCTCTACTAAAGTGTTTCTTGGCCCAGTAGCCAA
GCTCTTATTTTAACCTTAAAGACTCTTCAGGGAAAGATTCATCATTTAGAGCTAGAGAGAACACAAGCTGAAGATAACCT
GAACATGCTTTCCAAAGAAGCAGCACAGTATAAAAAGGCCTTAGAGAATGAAACGAATGAGAGAAATCTGGCACATGAGG
AACTGATAAAGCAGAAGAAAAATATAAGTATACAGTTATGTTCAGCCCAATCTCATACCCCTCTAGAAAAGCAACTAGAA
TATACTAAGAGAATGGTTCTCAATGTAGAGCGAGAAAAGAATATGATCCTAGAACAACAGGCCCAGCTTCAAAGGGAAAA
AGAACAAGATCAGATGAAGCTGCATGTAAAACTTGAAAAGCTCGATGTCTTAGACAAAGAGTGTTTTAGACTTACAACAA
CTCAGAAGACTGCTGAGGACAAGATTAAACATTAAGAGGAAAAACTCAGGGAAGAAGAACATCAGTGTAAGCTATTTCAA
GACAAAGCTTCCGAGCTTCCAACTGGACTTGAAATCAGTAGAATTTTAGTTTCAAATCCAAAACACTCCAGGGAAAAGAA
GACATCTTCAAAG

Alignment

ORF - retro_ogar_902 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.26 %
• Parental protein coverage: 98.8 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MNSELVNSVVGSYLKPPEKVL-VPSFTQNESSQTCQPKDLE-ITSAKGFHSP-NRQALILALKTLQEKIH
          .NSELV.S.VGSYLKPPE.VL.VPSFTQNESSQTCQPK.L...TS.K.F..P...QALIL.LKTLQ.KIH
Retrocopy LNSELVHSAVGSYLKPPERVL<VPSFTQNESSQTCQPKNLD*VTSTKVFLGP<SSQALILTLKTLQGKIH

Parental  RLELERTQAEDNLNTLSKEAAQYKKALENETIERNLAHEELIKQKKDISIQLCSAQSRCILLEKQLEYTK
          .LELERTQAEDNLN.LSKEAAQYKKALENET.ERNLAHEELIKQKK.ISIQLCSAQS....LEKQLEYTK
Retrocopy HLELERTQAEDNLNMLSKEAAQYKKALENETNERNLAHEELIKQKKNISIQLCSAQSHTP-LEKQLEYTK

Parental  RMVLNVEREKNMILEQQAQLQREKEQGQMKLHAKLEKLDVLEKECFRLTATQKTAEDKIKHLEEKLREEE
          RMVLNVEREKNMILEQQAQLQREKEQ.QMKLH.KLEKLDVL.KECFRLT.TQKTAEDKIKH.EEKLREEE
Retrocopy RMVLNVEREKNMILEQQAQLQREKEQDQMKLHVKLEKLDVLDKECFRLTTTQKTAEDKIKH*EEKLREEE

Parental  HQRKLFQDKASELQTGLEISRILMSSVSNPKHSREKKISSK
          HQ.KLFQDKASEL.TGLEISRIL...VSNPKHSREKK.SSK
Retrocopy HQCKLFQDKASELPTGLEISRIL---VSNPKHSREKKTSSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_902 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000183137	1 retrocopy	retro_hsap_591,
Gorilla gorilla	ENSGGOG00000014982	1 retrocopy	retro_ggor_523,
Nomascus leucogenys	ENSNLEG00000012502	1 retrocopy	retro_nleu_2216,
Otolemur garnettii	ENSOGAG00000015479	1 retrocopy	retro_ogar_902 ,
Pongo abelii	ENSPPYG00000016901	1 retrocopy	retro_pabe_598,
Pan troglodytes	ENSPTRG00000018480	1 retrocopy	retro_ptro_434,