RetrogeneDB ID: | retro_omer_11 | ||
Retrocopylocation | Organism: | Oryza meridionalis | |
Coordinates: | 3:38196044..38197157(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | OMERI03G38280 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | OMERI01G36440 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.37 % |
Parental protein coverage: | 84.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EPKIPEPFVWPNGDARPASAAELDMPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSGHGVDAALA |
...IP..F.WP.....P.S.A.....V....V..........R...QV..AC..HGFF.V..HG..AAL. | |
Retrocopy | QTEIPSQFIWP-AEESPGSVAAEELEVALIDVGAGAERSSVVR---QVGEACERHGFFLVVNHGIEAALL |
Parental | RAALDGASDFFRLPLAEKRRARRVPGTVSGYTSAHADRFASKLPWKETLSFGFHDRAAAPVVADYFSSTL |
..A......FF.LPL.EK.RA.R..G...GY.S....RFASKLPWKETLSF.........V...Y....L | |
Retrocopy | EEAHRCMDAFFTLPLGEKQRAQRRAGESCGYASSFTGRFASKLPWKETLSFRYSAGDEEGV-GEYLVRKL |
Parental | GPDFA-PMGRVYQKYCEEMKELSLTIMELLELSLGV---ERGYYREFFADSSSIMRCNYYPPCPEPERTL |
G.......G.VY..YC.EM..LSL..ME.L..SLG.....R.Y.R.FF....SIMR.NYYP.C..P..TL | |
Retrocopy | GAEHGRRLGEVYSRYCQEMSRLSLELMEVLGESLGIVGDRRHYFRRFFQRNDSIMRLNYYPACQRPLDTL |
Parental | GTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRE |
GTGPHCDPT.LTIL.QD.VGGLEV...G.WR...P.PGA.V.N.GDTFMALSN.RY.SCLHRAVVN.... | |
Retrocopy | GTGPHCDPTSLTILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAP |
Parental | RRSLAFFLCPREDRVVRPPPSAAT---PRHYPDFTWADLMRFTQRHYRADTRTLDAFTRWL |
RRSLAFFLCP..D.VVRPP........PR.YPDFTW..L..FTQRHYRAD.RTL.AF..WL | |
Retrocopy | RRSLAFFLCPEMDTVVRPPEELVDDHHPRVYPDFTWRALLDFTQRHYRADMRTLQAFSDWL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Leersia perrieri | LPERR01G34060 | 1 retrocopy | |
Oryza barthii | OBART01G39570 | 1 retrocopy | |
Oryza meridionalis | OMERI01G36440 | 1 retrocopy |
retro_omer_11 ,
|
Oryza glaberrima | ORGLA01G0334700 | 1 retrocopy | |
Oryza sativa japonica | OS01G0883800 | 1 retrocopy | |
Setaria italica | Si001573m.g | 1 retrocopy |