RetrogeneDB ID: | retro_opri_1065 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_64759:4771..5395(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGA | ||
Ensembl ID: | ENSOPRG00000015381 | ||
Aliases: | None | ||
Description: | phosphatidylinositol glycan anchor biosynthesis, class A [Source:HGNC Symbol;Acc:8957] |
Percent Identity: | 95.19 % |
Parental protein coverage: | 84.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RYQLHDRVHLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTRVGGIPEVLPEDLII |
RYQLHDRVHLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTRVGGIPEVLP.DLII | |
Retrocopy | RYQLHDRVHLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTRVGGIPEVLPKDLII |
Parental | LCEPSVKSLCDGLEKAILQFKSGLLRAPEEIHNLVKTFYTWRDVAERTERVYDRVAGEAVLPIDKRLDRL |
.CEPSVKSLCDGLEKAIL.FKSGLLRAPEEIHNL.KTF..WRDVAERTERVYDRVAGEAVLPI.KRLDRL | |
Retrocopy | VCEPSVKSLCDGLEKAILRFKSGLLRAPEEIHNLGKTF*PWRDVAERTERVYDRVAGEAVLPIVKRLDRL |
Parental | ISCCGPVTGYIFALLAVFSLLFLILLRWITPDSVIDVAVDATGPKSSWTLQHPRRAKLDEDDGKSETR |
ISCC.PVTGYI.ALLAVFSLLFLILLRWITPDSV.DVAVDATGPKSSWTLQHPRRAKLDEDDGKSETR | |
Retrocopy | ISCCAPVTGYILALLAVFSLLFLILLRWITPDSVTDVAVDATGPKSSWTLQHPRRAKLDEDDGKSETR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006415 | 1 retrocopy | |
Homo sapiens | ENSG00000165195 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007293 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009352 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000015381 | 1 retrocopy |
retro_opri_1065 ,
|
Pongo abelii | ENSPPYG00000020142 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021684 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003554 | 1 retrocopy |