RetrogeneDB ID: | retro_opri_450 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_123441:212..437(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOPRG00000010331 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPE | ||
Ensembl ID: | ENSOPRG00000015415 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161] |
Percent Identity: | 76. % |
Parental protein coverage: | 81.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKS |
MAYRG.GQKVQK..VQPI.LIFR.LQNRSRIQVWL.EQVN.R.EGCI.GFDEYMNLVLD.A.EIHSK... | |
Retrocopy | MAYRGLGQKVQKWKVQPISLIFRHLQNRSRIQVWLSEQVNKRTEGCIVGFDEYMNLVLDGAPEIHSKSQE |
Parental | RKQLG |
....G | |
Retrocopy | NNWVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |