RetrogeneDB ID: | retro_pabe_158 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:100405754..100406945(+) | ||
Located in intron of: | ENSPPYG00000003821 | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000003822 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DDI2 | ||
Ensembl ID: | ENSPPYG00000001841 | ||
Aliases: | None | ||
Description: | DNA-damage inducible 1 homolog 2 (S. cerevisiae) [Source:HGNC Symbol;Acc:24578] |
Percent Identity: | 72.45 % |
Parental protein coverage: | 73.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RQKENADPRPPVQFPNLPRIDFSSIAVPGTSSPRQRQPPGTQQSHS-SPGEITSSPQGLDNPALLRDMLL |
R....A...P...F.........S...P......Q...P..Q.SH....GE....PQGL..PAL.R.MLL | |
Retrocopy | RAPGRAPNQPRIDFSGIA-VPGTSSSCPQHPGQQQQRTPAAQRSHGLASGETVAGPQGLGSPALIRSMLL |
Parental | ANPHELSLLKERNPPLAEALLSGDLEKFSRVLVEQQQDRARREQERIRLFSADPFDLEAQAKIEEDIRQQ |
.NPH.LSLLKERNPPLAEALLSG.LE.FS.VL.EQQ...A.REQER..L..ADP.D.EAQAKIEE.IRQQ | |
Retrocopy | SNPHDLSLLKERNPPLAEALLSGSLETFSQVLMEQQREKALREQERLCLYMADPLDSEAQAKIEEEIRQQ |
Parental | NIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAK |
NIEENM.IA.EEAPESFGQV.MLYINCKVNGHP.KAFVDSGAQMTIMSQACAE.CNIMRLVDRRWAG.AK | |
Retrocopy | NIEENMNIAIEEAPESFGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAEQCNIMRLVDRRWAGVAK |
Parental | GVGTQKIIGRVHLAQVQIEGDFLPCSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVLVIGTTGSQTTFL |
GVGTQ.IIGRVHLAQ.QIEGDFL.CSFSILE.QPMDMLLGLDML.RHQCSIDLKKNVLVIGTTG.QT.FL | |
Retrocopy | GVGTQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYFL |
Parental | PEGELPECARLAYG |
PEGELP.C.R...G | |
Retrocopy | PEGELPLCSRMVNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .64 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .39 RPM |
SRP007412_heart | 0 .12 RPM | 3 .91 RPM |
SRP007412_kidney | 0 .03 RPM | 6 .36 RPM |
SRP007412_liver | 0 .03 RPM | 9 .18 RPM |