RetrogeneDB ID: | retro_mmul_231 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:102641499..102642690(+) | ||
Located in intron of: | ENSMMUG00000005353 | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000005354 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DDI2 | ||
Ensembl ID: | ENSMMUG00000019912 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.11 % |
Parental protein coverage: | 73.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RQKENADPRPPVQFPNLPRIDFSSIAVPGTSSPRQRQPPGTQQSHS-SPGEITSSPQGLDNPALLRGMLL |
R....A...P...F.........S...P......Q...P..Q.SH....GE....PQGL..P.L.R.MLL | |
Retrocopy | RAPGRAPNQPRIDFSGIA-VPGTSSSRPQHPGQQQQRTPAAQRSHGLASGETVGVPQGLGSPGLIRSMLL |
Parental | ANPHELSLLKERNPPLAEALLSGDLEKFSRVLVEQQQDRARREQERIRLFSADPFDLEAQAKIEEDIRQQ |
.NPH.LSLLKERNPPLAEALLSG.LE.FS.VL..QQ...A.REQER..L..ADP.D.EAQAKIEE.IRQQ | |
Retrocopy | SNPHDLSLLKERNPPLAEALLSGSLETFSQVLMAQQREKALREQERLHLYTADPLDREAQAKIEEEIRQQ |
Parental | NIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAK |
NIEENM.IA.EEAPESFGQV.MLYINCKVNGHP.KAFVDSGAQMTIMSQACAERCNIMRLVDRRWAG.AK | |
Retrocopy | NIEENMNIAIEEAPESFGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAK |
Parental | GVGTQKIIGRVHLAQVQIEGDFLPCSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVLVIGTTGSQTTFL |
GVGTQ.IIGRVHLAQ.QIEGDFL.CSFSILE.QPMDMLLGLDML.RHQCSIDLKKNVLVIGTTG.QT.FL | |
Retrocopy | GVGTQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYFL |
Parental | PEGELPECARLAYG |
PEGELP.C.R...G | |
Retrocopy | PEGELPLCSRMVNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 13 .89 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 12 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .30 RPM |
SRP007412_heart | 0 .18 RPM | 7 .01 RPM |
SRP007412_kidney | 0 .12 RPM | 16 .90 RPM |
SRP007412_liver | 0 .00 RPM | 13 .46 RPM |
SRP007412_testis | 267 .13 RPM | 7 .16 RPM |