RetrogeneDB ID: | retro_pabe_1968 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:85818362..85818673(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TOMM22 | ||
Ensembl ID: | ENSPPYG00000011825 | ||
Aliases: | None | ||
Description: | translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:HGNC Symbol;Acc:18002] |
Percent Identity: | 70.48 % |
Parental protein coverage: | 73.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LPKGDAEKPEEELEEDDD-EELDETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIG |
L.KG..EKPEEEL.E.D...ELDETL.ERLWGLT.MF.ERV.S.A.ATF.L..F..QKMYRFS..AL.IG | |
Retrocopy | LLKGASEKPEEELKEVDN<QELDETLLERLWGLTDMFLERVWSLARATFNLFVFIGQKMYRFSNTALQIG |
Parental | TTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGP |
.TSFM.LVLPV.FE.E..QME..QQLQ.RQILLGP | |
Retrocopy | PTSFMTLVLPVAFEPERSQMEPRQQLQSRQILLGP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 24 .44 RPM |
SRP007412_cerebellum | 0 .00 RPM | 15 .69 RPM |
SRP007412_heart | 0 .00 RPM | 17 .01 RPM |
SRP007412_kidney | 0 .03 RPM | 29 .14 RPM |
SRP007412_liver | 0 .00 RPM | 22 .71 RPM |