RetrogeneDB ID: | retro_cpor_754 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_26:20333769..20334045(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TOMM22 | ||
Ensembl ID: | ENSCPOG00000005963 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.38 % |
Parental protein coverage: | 64.79 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LTEMFPERVRSAAGATFDLSLFVAQ-KMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEPGRGVFSIQI |
L..M..ER....A.ATF.LS....Q.K..RFS..A..IGTTSFMILV...V.E...LQME....V....I | |
Retrocopy | LMKMLTERIWPMARATFNLS*VMVQ<KLNRFSWVAF*IGTTSFMILVPLLVSESQQLQMEQHQQV*HCKI |
Parental | LLGPNTGLSGGM-PGALPSLPGKI |
LL.PNTGLSGGM..GA.PSLP.KI | |
Retrocopy | LLEPNTGLSGGM>QGAVPSLPVKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .74 RPM |
SRP017611_liver | 0 .00 RPM | 11 .88 RPM |
SRP040447_lung | 0 .00 RPM | 16 .80 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 23 .44 RPM |