>retro_pabe_2776
GTGGCCCTCCTGCTGCGCTTCGTGCTCCTGTGCGGAGTAGCGGATTTTGCCAGAAGTTTGAGTATCACTACTCCTGAAGA
GATGATTGAAAAAGCCAAAGGGGAAACTGCCTATCTGCCATGCAAATTTACGCTTAGTCCCGAAGACCAGGGACCGCTGG
ACATCGAGTGGCTGATATCACCAGCGGATAATCAGAACGTGGATCAAGTGATTATTTTATATTCTGGAGACAAAATTTAT
GACGACTACTATCCAGATCTGAAAGGCCGAGTACATTTTACGAGTAATGATCTCAAATCTGGTGATGCATCAATAAATGT
AACGAATTTACAGCTGTCAGATATTGGCACATATCAGTGCAAAGTGAAAAAAGCTCCTGGTGTTGCAAATAAGAAGATTC
ATCTGGTAGGTCTTGTTAAGCCTTCAGGTGCAAGATGTTACGTTGATGGATCAGAAGAAATTGGAAGTGACTTTAAACTA
AAATATGAACCAAAAGAAGGTTCACTTCCATTACAGTATGAGTGGCAAAAATTGTCTGACTCACAGAAAATGCCCACTTT
GTGGTTAGCAGAAATGACTTCATCTGTTATATCTGTAAAAAATGCCTCTTCTGAGTACTCCGGGACATACAGCTGTACAG
TCAGAAACAGAGTGGGCTCTGCTCAGTGCCTGTTGCGTCTAAACTTTGTCCCTCCTTCAAATAAAGCTGGACTAATTGCA
GGAGCCATTATAGGAACTTTGCTTGCTCTGGCGCTCATTGGTCTTATCATCTTTTGCTGTCGTAAAAAGCGCAGAGAAGA
AAAATATGAAAAGGAAATTCATCACGATATCAGGGAAGATGTGCCATCTCCAAAGAGCCGTACGTCCACTGCCAGAAGCT
ACATCGGCAGTAATCATTCATCCCTGGGATCCATGTCTCCTTCCAACATGGAAGGATATTCCAAGACTCAGTATAACCAA
CTACCAAGTGAAGACTTTGAACGCACTCCTCAGAGTCCGACTCTCCCACCGCTAAGGTAGCTGCCCCTAATCTAAGTCGA
ATGGGCGCGATTCCTGGATGATTCCAGCACAGAGCAAGGATGGGTCTATAGTA
ORF - retro_pabe_2776 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
96.73 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MALLLRFVLLCGVADFARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQV |
| .ALLLRFVLLCGVADFARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQ.VDQV |
Retrocopy | VALLLRFVLLCGVADFARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQNVDQV |
|
Parental | IILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK |
| IILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV.LVK |
Retrocopy | IILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVGLVK |
|
Parental | PSGARCYVDGSEEIGSDFKLKCEPKEGSLPLQYEWQKLSDSQKMPTLWLAEMTSSVISVKNASSEYSGTY |
| PSGARCYVDGSEEIGSDFKLK.EPKEGSLPLQYEWQKLSDSQKMPTLWLAEMTSSVISVKNASSEYSGTY |
Retrocopy | PSGARCYVDGSEEIGSDFKLKYEPKEGSLPLQYEWQKLSDSQKMPTLWLAEMTSSVISVKNASSEYSGTY |
|
Parental | SCTVRNRVGSDQCLLRLNVVPPSNKAGLIAGAIIGTLLALALIGLIIFCCRKKRREEKYEKEVHHDIRED |
| SCTVRNRVGS.QCLLRLN.VPPSNKAGLIAGAIIGTLLALALIGLIIFCCRKKRREEKYEKE.HHDIRED |
Retrocopy | SCTVRNRVGSAQCLLRLNFVPPSNKAGLIAGAIIGTLLALALIGLIIFCCRKKRREEKYEKEIHHDIRED |
|
Parental | VPPPKSRTSTARSYIGSNHSSLGSMSPSNMEGYSKTQYNQVPSEDFERTPQSPTLPP-AKVAAPNLSRMG |
| VP.PKSRTSTARSYIGSNHSSLGSMSPSNMEGYSKTQYNQ.PSEDFERTPQSPTLPP.AKVAAPNLSRMG |
Retrocopy | VPSPKSRTSTARSYIGSNHSSLGSMSPSNMEGYSKTQYNQLPSEDFERTPQSPTLPP<AKVAAPNLSRMG |
|
Parental | AIP-VMIPAQSKDGSIV |
| AIP..MIPAQSKDGSIV |
Retrocopy | AIP<WMIPAQSKDGSIV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .06 RPM |
5 .31 RPM |
SRP007412_cerebellum |
0 .00 RPM |
4 .01 RPM |
SRP007412_heart |
0 .00 RPM |
17 .16 RPM |
SRP007412_kidney |
0 .00 RPM |
6 .86 RPM |
SRP007412_liver |
0 .00 RPM |
11 .78 RPM |
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_2776 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_2776 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_pabe_2776 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
16 retrocopies.