RetrogeneDB ID: | retro_shar_252 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL835145.1:52764..53444(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CXADR | ||
Ensembl ID: | ENSSHAG00000005309 | ||
Aliases: | None | ||
Description: | coxsackie virus and adenovirus receptor [Source:HGNC Symbol;Acc:2559] |
Percent Identity: | 67.24 % |
Parental protein coverage: | 61.81 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | KPSGTKCYLDGSSEIGSDFKLRCESEGSLPLYYEWQKFPNTEKFPPVS--LSDLNPAIIS-VRNATPEYS |
KPS.T.CYLD.SSEIGSDFKL.C.SE.SLPL.YEWQK.....K....S..LSDLNP.II..V.N.TPEYS | |
Retrocopy | KPSRTRCYLDRSSEIGSDFKLKCKSEDSLPLHYEWQKASQGRKNVCLSHFLSDLNP*IIL<VQNPTPEYS |
Parental | GTYSCTVKNRVGFDKCILT-VTVIPPSNTAGTIAGAIVGTLCGLLLLGLLIFCCCKKRKEEKYEKE-VHH |
.T.SCTVKNRV..DK.IL..V.V.PPSN.AGTI.GAI.GT.CGLLLLGLLIFC..KK.KE.KYEKE..HH | |
Retrocopy | ST*SCTVKNRVSVDKWILM<VNVVPPSNAAGTIVGAIIGTFCGLLLLGLLIFCYYKKHKEDKYEKE>IHH |
Parental | DIREDVPP-PKSRTSTARSYIGSNHSSLGSMSPSNIEGYSKAQYNQVPSEDFDRTPQ-SPSFPPAKVAAS |
DIR.D..P..K.R.S.AR.YIGS....LGSMS.SN.E.YSK.Q....PSEDFD.T.Q.SPSF.PAKVAAS | |
Retrocopy | DIRKDILP<LKYRRSPARNYIGSSLLPLGSMSLSNREDYSKLQCS*EPSEDFDPTSQ>SPSFLPAKVAAS |
Parental | NLSRMGAIPVMIPAQSKDGSIV |
NLS.M..IP.MI...SKD.S.V | |
Retrocopy | NLSKMETIPLMIAEKSKDRSAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000012975 | 1 retrocopy | |
Homo sapiens | ENSG00000154639 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000002063 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000011295 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000013795 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000005309 | 1 retrocopy |
retro_shar_252 ,
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