RetrogeneDB ID: | retro_pabe_3335 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:58269082..58270015(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEPT10 | ||
Ensembl ID: | ENSPPYG00000012144 | ||
Aliases: | None | ||
Description: | septin-10 [Source:RefSeq peptide;Acc:NP_001127203] |
Percent Identity: | 92.6 % |
Parental protein coverage: | 74.76 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | NVKLKAQTYELQESNVQLKLTIVNTVGFGDQINKEESYQPIVDYIDAQFEAYLQEELKIKRSLFTYHDSR |
NVKLK.QT.ELQESNV.LKLTIVN.V.FGDQINKEESYQ.IVDYIDAQFEAYLQE.LKIKRSLFTYHDSR | |
Retrocopy | NVKLKHQT*ELQESNVRLKLTIVNRVEFGDQINKEESYQLIVDYIDAQFEAYLQE*LKIKRSLFTYHDSR |
Parental | IHVCLYFISPTGHSLKTLDLLTMKNLDSKVNIIPVIAK---ADTVSKTELQKFKIKLMSELVSNGVQIYQ |
IHV.LYFISPTGHSLKTLDLLTMKNLDSKVNIIPVIA......TVSKTELQKFKIK.MSELVSNGVQI.Q | |
Retrocopy | IHVYLYFISPTGHSLKTLDLLTMKNLDSKVNIIPVIANHWFVNTVSKTELQKFKIKFMSELVSNGVQIHQ |
Parental | FPTDDDTIAKVNAAMNGQLPFAVVGSMDEVKVGNKMVKARQYPWGVVQVENENHCDFVKLREMLICTNME |
FPTDDDTIA.VNAAMNGQLPFA.VGS.DEVK.GNKMVKARQYPWGVVQVENENHCDFVKLREMLICTNME | |
Retrocopy | FPTDDDTIA*VNAAMNGQLPFAAVGSKDEVKIGNKMVKARQYPWGVVQVENENHCDFVKLREMLICTNME |
Parental | DLREQTHTRHYELYRRCKLEEMGFTDVGPENKPVSLQETYEAKRHEFHGERQRKEEEMKQMFVQRVKEKE |
DLREQTHTRHYELYRRCKLEEMGFTDVGPENKPVSLQETYEAKRH.FHGERQRKEEEMKQMFVQ.VKEKE | |
Retrocopy | DLREQTHTRHYELYRRCKLEEMGFTDVGPENKPVSLQETYEAKRHDFHGERQRKEEEMKQMFVQPVKEKE |
Parental | AILKEAERELQAKFEHLKRLHQEERMKLEEK |
AILKEAERELQA.FEHLKRLHQEERMKLEEK | |
Retrocopy | AILKEAERELQANFEHLKRLHQEERMKLEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .21 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .55 RPM |
SRP007412_heart | 0 .00 RPM | 16 .47 RPM |
SRP007412_kidney | 0 .03 RPM | 17 .63 RPM |
SRP007412_liver | 0 .03 RPM | 16 .89 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4060 |
Pan troglodytes | retro_ptro_2753 |
Gorilla gorilla | retro_ggor_2728 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017754 | 3 retrocopies | |
Homo sapiens | ENSG00000186522 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013659 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017273 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001328 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012144 | 1 retrocopy |
retro_pabe_3335 ,
|
Pongo abelii | ENSPPYG00000017639 | 1 retrocopy |