RetrogeneDB ID: | retro_ptro_151 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:53442792..53443676(+) | ||
Located in intron of: | ENSPTRG00000000748 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBB | ||
Ensembl ID: | ENSPTRG00000017939 | ||
Aliases: | TUBB, TUBB2A | ||
Description: | Pan troglodytes tubulin, beta (TUBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001045509] |
Percent Identity: | 79.07 % |
Parental protein coverage: | 67.57 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEP |
MREIVHIQA.QCGN..GAK.W.VISDE..IDPT.T.HGDSDLQLD....YY.EA..GKYVP.A.LVDLEP | |
Retrocopy | MREIVHIQACQCGNRMGAKCWDVISDEREIDPTST*HGDSDLQLDCVTMYYSEAIDGKYVPCANLVDLEP |
Parental | GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLG |
GTMDS..SGPFGQ...PDNFVFGQSGAGNNWAKGHY.EGA.LVDSV.DVV..E.ESCDCLQGFQLTHS.. | |
Retrocopy | GTMDSASSGPFGQVLKPDNFVFGQSGAGNNWAKGHYIEGAKLVDSVVDVVQ-E*ESCDCLQGFQLTHSM- |
Parental | GGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI |
...GSGMGTL.ISKIRE..PD.IMNTFSVVP.PKVSDTVVEPYN.TLSVHQ.VENTDETYCIDNEALYDI | |
Retrocopy | ---GSGMGTLFISKIREACPDCIMNTFSVVPPPKVSDTVVEPYNITLSVHQSVENTDETYCIDNEALYDI |
Parental | CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA-PLTSRGSQ |
CFRTLKLTTP.YGDLNHLVSAT.S.VTTCL.FPGQLNADLRKLAV..VP.P.LH.FM.GFA.PLTS.GS. | |
Retrocopy | CFRTLKLTTPNYGDLNHLVSATTSSVTTCLHFPGQLNADLRKLAVKLVPLPHLHYFMAGFA<PLTSCGS* |
Parental | QYRALTVPELTQQVFDAKNMM |
Q.RA.TV..L..Q.F.AKN.M | |
Retrocopy | QHRAFTVTKLIRQDFNAKNIM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .48 RPM | 376 .72 RPM |
SRP007412_cerebellum | 0 .65 RPM | 279 .51 RPM |
SRP007412_heart | 0 .41 RPM | 196 .91 RPM |
SRP007412_kidney | 1 .10 RPM | 189 .18 RPM |
SRP007412_liver | 3 .60 RPM | 550 .20 RPM |
SRP007412_testis | 0 .00 RPM | 49 .85 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_155 |
Gorilla gorilla | retro_ggor_244 |
Pongo abelii | retro_pabe_467 |
Macaca mulatta | retro_mmul_375 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Gorilla gorilla | ENSGGOG00000022655 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000015992 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023684 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005348 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000032213 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000014770 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000008496 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017939 | 3 retrocopies |
retro_ptro_151 , retro_ptro_2527, retro_ptro_2677,
|
Pan troglodytes | ENSPTRG00000023373 | 2 retrocopies |