Parental gene:

TUBB, ENSMMUG00000023684

Aliases:TUBB, TUBB2A, TUBB2B, TUBB5
Description:Tubulin beta chain [Source:UniProtKB/Swiss-Prot;Acc:P69895]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:4:30304856..30310098(+)


>ENSMMUG00000023684
ATGAGGGAAATCGTGCACATCCAGGCCGGTCAGTGTGGCAACCAGATCGGTGCCAAGTTCTGGGAGGTGATCAGTGATGA
ACATGGCATCGACCCCACCGGCACCTACCACGGGGACAGCGACCTGCAGCTGGACCGCATCTCCGTGTACTACAATGAAG
CCACAGGTGGCAAATATGTTCCTCGTGCCATCCTGGTGGATCTAGAACCTGGGACCATGGACTCTGTTCGCTCAGGTCCT
TTTGGCCAGATCTTTAGACCAGACAACTTTGTATTTGGTCAGTCTGGGGCAGGTAACAACTGGGCCAAAGGCCACTACAC
AGAGGGGGCCGAGCTGGTTGATTCTGTCCTGGATGTGGTACGAAAGGAGGCAGAGAGCTGTGACTGCCTGCAGGGCTTCC
AGCTGACCCACTCACTGGGTGGAGGCACAGGCTCTGGAATGGGCACTCTCCTTATCAGCAAGATCCGAGAAGAGTACCCT
GATCGCATCATGAACACCTTCAGTGTGGTTCCTTCACCCAAAGTATCTGACACCGTGGTCGAGCCCTACAATGCCACCCT
CTCCGTCCATCAGTTGGTAGAGAACACTGATGAGACCTATTGCATTGACAACGAGGCCCTCTATGATATCTGCTTCCGTA
CTCTGAAGCTGACCACACCAACCTACGGGGATCTGAACCACCTCGTCTCAGCCACCATGAGCGGTGTCACCACCTGCCTC
CGCTTCCCTGGCCAGCTCAATGCTGACCTCCGCAAATTGGCAGTCAACATGGTCCCCTTCCCACGCCTCCATTTCTTTAT
GCCTGGCTTTGCCCCTCTCACCAGCCGTGGAAGCCAGCAATATCGAGCTCTTACAGTGCCAGAACTCACCCAGCAGGTCT
TCGATGCCAAGAACATGATGGCTGCCTGTGACCCCCGCCACGGCCGATACCTCACCGTGGCTGCTGTCTTCCGTGGTCGG
ATGTCCATGAAGGAGGTCGATGAGCAGATGCTTAACGTGCAGAACAAAAACAGCAGCTACTTTGTGGAATGGATCCCCAA
CAACGTCAAGACAGCTGTCTGTGACATCCCACCTCGTGGCCTCAAGATGGCAGTCACCTTCATCGGCAACAGCACGGCCA
TCCAGGAGCTCTTCAAGCGCATCTCGGAGCAGTTCACTGCCATGTTCCGCCGGAAGGCCTTCCTCCACTGGTACACAGGC
GAGGGCATGGACGAGATGGAGTTCACTGAGGCTGAGAGCAACATGAACGACCTCGTCTCTGAGTATCAGCAGTACCAGGA
TGCCACCGCAGAAGAGGAGGAGGATTTCGGTGAGGAGGCCGAAGAGGAGGCCTAA

Library Parental gene expression (RPM)
SRP007412_brain 303 .43 RPM
SRP007412_brain_prefrontal_cortex 518 .82 RPM
SRP007412_cerebellum 315 .71 RPM
SRP007412_heart 162 .11 RPM
SRP007412_kidney 150 .00 RPM
SRP007412_liver 235 .48 RPM
SRP007412_testis 67 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006969 possible_ortholog 2 retrogenes
retro_btau_471, retro_btau_55,
Canis familiaris ENSCAFG00000000443 possible_ortholog 1 retrogene
retro_cfam_1860,
Echinops telfairi ENSETEG00000013572 possible_ortholog 1 retrogene
retro_etel_641,
Gorilla gorilla ENSGGOG00000022655 ortholog_one2one 4 retrogenes
retro_ggor_2388, retro_ggor_244, retro_ggor_2519, retro_ggor_2651,
Macropus eugenii ENSMEUG00000015992 ortholog_one2one 1 retrogene
retro_meug_978,
Macaca mulatta ENSMMUG00000012164 within_species_paralog 2 retrogenes
retro_mmul_1849, retro_mmul_2533,
Macaca mulatta ENSMMUG00000029059 within_species_paralog 1 retrogene
retro_mmul_1777,
Mustela putorius furo ENSMPUG00000011690 possible_ortholog 3 retrogenes
retro_mputfur_1123, retro_mputfur_607, retro_mputfur_807,
Nomascus leucogenys ENSNLEG00000005348 possible_ortholog 1 retrogene
retro_nleu_498,
Otolemur garnettii ENSOGAG00000032213 possible_ortholog 1 retrogene
retro_ogar_2391,
Ochotona princeps ENSOPRG00000014770 ortholog_one2one 4 retrogenes
retro_opri_1106, retro_opri_237, retro_opri_46, retro_opri_656,
Pongo abelii ENSPPYG00000016419 possible_ortholog 4 retrogenes
retro_pabe_2920, retro_pabe_3210, retro_pabe_3698, retro_pabe_467,
Pan troglodytes ENSPTRG00000017939 ortholog_one2one 3 retrogenes
retro_ptro_151, retro_ptro_2527, retro_ptro_2677,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_375 80.56 71.40
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2. retro_mmul_2501 89.31 94.37
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Download FASTA sequences of all ENSMMUG00000023684 retrocopies