RetrogeneDB ID: | retro_rnor_1491 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:47002448..47002786(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ndufa7 | ||
Ensembl ID: | ENSRNOG00000006939 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase [Source:RefSeq peptide;Acc:NP_001100242] |
Percent Identity: | 77.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASATRVIQKLRNWASGQDLQAKLQLRYQEIAKRTQPPPKLPVGPSHKLSNNYYCTRDGRREVVPPSIIM |
M.SAT..IQKL.N.AS.QDLQ.KLQL.YQEI...TQPPPK.PVGPSHKLSN.YYC.RDG..EVVPPS.IM | |
Retrocopy | MVSATCAIQKLWN*ASEQDLQVKLQLHYQEIPEPTQPPPKRPVGPSHKLSNSYYCARDGSWEVVPPSVIM |
Parental | SSQKALVSGKTAESSAVAAT-KRAVT-PAPPMKRWELSRDQPYL |
S.QKALV.GKTA.SSAVAAT.KRAV..PAPPM.RWELS..QPYL | |
Retrocopy | SLQKALVLGKTALSSAVAATEKRAVN<PAPPMERWELSKAQPYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 20 .42 RPM |
SRP017611_kidney | 0 .00 RPM | 31 .05 RPM |
SRP017611_liver | 0 .00 RPM | 23 .26 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000685 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010709 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000012324 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015637 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000006939 | 2 retrocopies |
retro_rnor_1491 , retro_rnor_1793,
|