RetrogeneDB ID: | retro_rnor_1804 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:89672366..89672993(+) | ||
Located in intron of: | ENSRNOG00000009630 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000032900 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Timm23 | ||
Ensembl ID: | ENSRNOG00000019811 | ||
Aliases: | None | ||
Description: | mitochondrial import inner membrane translocase subunit Tim23 [Source:RefSeq peptide;Acc:NP_062225] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEGGGGSSNKSTGGLAGFFGAGGAGYSNADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEFILPTGANKTR |
MEGGGGSSNKSTGGLAGFFGAGGAGYSNADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEFILPTGANKTR | |
Retrocopy | MEGGGGSSNKSTGGLAGFFGAGGAGYSNADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEFILPTGANKTR |
Parental | GRFELAFFTIGGCCMTGAAFGALNGLRLGLKETQSMPWSKPRNVQILNMVTRQGALWANTLGSLALLYSA |
GRFELAFFTIGGCCMTGAAFGALNGLRLGLKETQSMPWSKPRNVQILNMVTRQGALWANTLGSLALLYSA | |
Retrocopy | GRFELAFFTIGGCCMTGAAFGALNGLRLGLKETQSMPWSKPRNVQILNMVTRQGALWANTLGSLALLYSA |
Parental | FGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLRGIARGGLAGLTLTSVYALYNNWEHMKGSLLQQSL |
FGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLRGIARGGLAGLTLTSVYALYNNWEHMKGSLLQQSL | |
Retrocopy | FGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLRGIARGGLAGLTLTSVYALYNNWEHMKGSLLQQSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 18 .33 RPM |
SRP017611_kidney | 0 .07 RPM | 39 .64 RPM |
SRP017611_liver | 0 .34 RPM | 28 .64 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007501 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000029477 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007073 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013336 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000019917 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000002661 | 2 retrocopies | |
Mus musculus | ENSMUSG00000013701 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000525 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015393 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005255 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000015914 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019811 | 3 retrocopies |
retro_rnor_1804 , retro_rnor_225, retro_rnor_661,
|
Sorex araneus | ENSSARG00000010335 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025276 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000007041 | 1 retrocopy |