RetrogeneDB ID: | retro_chof_797 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_149334:2220..2840(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000007073 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MEGGGGSGNKTTGGLAGFFGAGGAGYSHADL-AGVPXXXXXXXXXXXXXXXXXXXXDTDEFILPTGANKT |
.E.G.GS.NKTT.GLA.FFGA.GA.Y.H.D..A.VP....................DTDEFILPT.ANK. | |
Retrocopy | VEDGWGSENKTTVGLASFFGASGAVYLHTDM<ASVPLTGMNPLSPYLYVDPCYVMQDTDEFILPTRANKA |
Parental | RGRFELAFFTIGGCCMTGAAFGAINGLRLGLKETQTMAWSKPRNVQILNMVTRQGALWANTLGSLALLYS |
.GRFEL.FF..GGCCMTGAAFGA.NGL.LGLKETQTM.WSKP.NVQILN.VTRQGAL.ANTLGSLALLYS | |
Retrocopy | QGRFELTFFSFGGCCMTGAAFGAMNGL*LGLKETQTMTWSKPKNVQILNTVTRQGAL*ANTLGSLALLYS |
Parental | AFGVIIEKTRGAEDDLNTIAAGTMTGMLYKCTGGLRGVARGGLAGLTLTSLYALYNNWEHMKGSLLQQSL |
AFGV.I..TRGAEDDLNT.AAGTMTG....C..G.R.VA..GLAGLTLT.LYALYNNWE...GSLL..SL | |
Retrocopy | AFGVVIKQTRGAEDDLNTVAAGTMTG-IHRCSLG-REVA*DGLAGLTLTTLYALYNNWEYLRGSLLRLSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007501 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000029477 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007073 | 1 retrocopy |
retro_chof_797 ,
|
Callithrix jacchus | ENSCJAG00000013336 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000019917 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000002661 | 2 retrocopies | |
Mus musculus | ENSMUSG00000013701 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000525 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015393 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005255 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000015914 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019811 | 3 retrocopies | |
Sorex araneus | ENSSARG00000010335 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025276 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000007041 | 1 retrocopy |