RetrogeneDB ID: | retro_rnor_2864 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:123544950..123545320(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Bcas2 | ||
Ensembl ID: | ENSRNOG00000018783 | ||
Aliases: | None | ||
Description: | pre-mRNA-splicing factor SPF27 [Source:RefSeq peptide;Acc:NP_001099928] |
Percent Identity: | 83.87 % |
Parental protein coverage: | 53.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | CVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAG |
CVNNSMAQLEHQA..IENLELMS.H.CNAWKV.NE.LVHMIEHAQKE.QKLRKHIQDL..QRKNM.LTAG | |
Retrocopy | CVNNSMAQLEHQAGQIENLELMSRHRCNAWKVENEHLVHMIEHAQKEFQKLRKHIQDLQRQRKNMRLTAG |
Parental | AKLRE-MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGE---ANKENIRQDF |
AKLRE.MESNWVSLVSKN.E.E.TIV.LENEIYQIKQQHGE....NKENI.QDF | |
Retrocopy | AKLRE>MESNWVSLVSKN*EMEWTIVHLENEIYQIKQQHGEGGGGNKENICQDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 22 .65 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .33 RPM |
SRP017611_liver | 0 .00 RPM | 16 .54 RPM |