Parental gene:

BCAS2, ENSCPOG00000020532

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_2:38966833..38976986(-)


>ENSCPOG00000020532
ATGGCGGGCACGGGCTTGGTGGCCGGAGAGGTAGTAGTGGATGCACTACCATATTTTGATCAAGGGTATGAAGCGCCAGG
CGTGCGGGAAGCGGCTGCGGCGCTGGTAGAGGAAGAGACTCGCCGATACCGACCTACCAAGAATTACCTGAGTTACTTAT
CATCCCCGGATTATTCTGCTTTTGAAACTGACATAATGCGAAATGAGTTTGAAAGATTGGCTGCTCGACAACCAATTGAA
TTGCTCAGTATGAAACGATACGAGCTTCCAGCCCCTTCCTCAGGTCAGAAAAATGACATTACTGCATGGCAAGAATGTGT
AAACAATTCTATGGCTCAATTAGAGCATCAAGCAGTTCGAATTGAGAATCTAGAACTGATGTCCCAGCATGGATGTAATG
CCTGGAAAGTATATAACGAAAATCTAGTTCATATGATTGAACATGCACAGAAAGAGCTTCAGAAGTTAAGGAAACACATT
CAAGATTTAAACTGGCAGCGAAAGAATATGCAGCTCACCGCTGGATCAAAACTGAGAGAAATGGAGTCAAATTGGGTATC
CCTGGTCAGTAAGAATTATGAGATTGAACGGACTATTGTACAACTAGAAAATGAAATCTATCAAATTAAGCAGCAACAGG
GAGAGGCAAACAAAGAAAATATCCGGCAAGACTTCTGA

Library Parental gene expression (RPM)
SRP017611_liver 23 .68 RPM
SRP017611_kidney 25 .33 RPM
SRP017611_brain 21 .80 RPM
SRP040447_lung 15 .64 RPM
SRP040447_skeletal_muscle 16 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000012448 ortholog_one2many 1 retrogene
retro_cjac_39,
Dasypus novemcinctus ENSDNOG00000018484 ortholog_one2one 2 retrogenes
retro_dnov_2350, retro_dnov_2617,
Homo sapiens ENSG00000116752 ortholog_one2one 2 retrogenes
retro_hsap_1220, retro_hsap_427,
Gorilla gorilla ENSGGOG00000028233 ortholog_one2one 2 retrogenes
retro_ggor_417, retro_ggor_949,
Loxodonta africana ENSLAFG00000003183 ortholog_one2many 1 retrogene
retro_lafr_709,
Microcebus murinus ENSMICG00000013720 ortholog_one2one 1 retrogene
retro_mmur_947,
Myotis lucifugus ENSMLUG00000005653 ortholog_one2many 3 retrogenes
retro_mluc_1018, retro_mluc_1609, retro_mluc_2307,
Macaca mulatta ENSMMUG00000014496 ortholog_one2many 1 retrogene
retro_mmul_517,
Nomascus leucogenys ENSNLEG00000004737 ortholog_one2one 2 retrogenes
retro_nleu_1022, retro_nleu_692,
Oryctolagus cuniculus ENSOCUG00000016784 ortholog_one2one 2 retrogenes
retro_ocun_1443, retro_ocun_1560,
Otolemur garnettii ENSOGAG00000007544 ortholog_one2one 3 retrogenes
retro_ogar_2847, retro_ogar_3226, retro_ogar_692,
Procavia capensis ENSPCAG00000012077 ortholog_one2one 1 retrogene
retro_pcap_31,
Pongo abelii ENSPPYG00000001000 ortholog_one2one 2 retrogenes
retro_pabe_294, retro_pabe_716,
Pan troglodytes ENSPTRG00000001136 ortholog_one2one 3 retrogenes
retro_ptro_325, retro_ptro_557, retro_ptro_835,
Pteropus vampyrus ENSPVAG00000008220 ortholog_one2one 3 retrogenes
retro_pvam_1467, retro_pvam_285, retro_pvam_502,
Rattus norvegicus ENSRNOG00000018783 ortholog_one2one 1 retrogene
retro_rnor_2864,
Sorex araneus ENSSARG00000013847 ortholog_one2one 2 retrogenes
retro_sara_144, retro_sara_180,
Sarcophilus harrisii ENSSHAG00000008467 ortholog_one2one 7 retrogenes
retro_shar_271, retro_shar_289, retro_shar_320, retro_shar_604, retro_shar_722, retro_shar_739, retro_shar_784,
Ictidomys tridecemlineatus ENSSTOG00000014760 ortholog_one2many 1 retrogene
retro_itri_107,
Tupaia belangeri ENSTBEG00000002231 ortholog_one2one 1 retrogene
retro_tbel_1418,
Taeniopygia guttata ENSTGUG00000001012 ortholog_one2one 1 retrogene
retro_tgut_26,
Tarsius syrichta ENSTSYG00000011964 ortholog_one2one 2 retrogenes
retro_tsyr_1678, retro_tsyr_706,
Tursiops truncatus ENSTTRG00000010759 ortholog_one2one 1 retrogene
retro_ttru_199,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1026 64.52 95.56
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2. retro_cpor_1085 64.18 58.22
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Download FASTA sequences of all ENSCPOG00000020532 retrocopies