Parental gene:

BCAS2, ENSOCUG00000016784

Aliases:None
Description:breast carcinoma amplified sequence 2 [Source:HGNC Symbol;Acc:975]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:13:49604411..49616346(+)


>ENSOCUG00000016784
ATGGCGGGCACTGGCTTGGTGGCCGGAGAGGTTGTGGTGGACGCGCTGCCGTATTTCGATCAAGGTTATGAAGCGCCTGG
TGTGCGGGAAGCGGCTGCAGCCCTGGTGGAGGAGGAAACTCGCCGGTACCGACCCACTAAAAACTACCTGAGCTACCTGA
CAGCCCCGGATTATTCTGCTTTTGAAACTGACATAATGAGAAATGAATTTGAAAGACTGGCTGCTCGACAACCAATTGAA
CTGCTCAGTATGAAACGATACGAGCTTCCAGCCCCATCTTCAGGTCAGAAAAATGACATTACCGCGTGGCAAGAATGTGT
CAACAATTCTATGGCCCAGCTAGAGCACCAGGCTGTTCGAATTGAGAATCTGGAACTGATGTCACAGCATGGATGTAATG
CCTGGAAAGTATATAATGAAAATCTAGTTCACATGATTGAACATGCACAGAAAGAGCTTCAGAAGTTAAGGAAACACATT
CAAGATTTAAACTGGCAGCGAAAGAACATGCAACTCACAGCTGGATCTAAACTAAGAGAAATGGAGTCGAATTGGGTATC
CCTGGTCAGTAAGAATTACGAGATTGAACGGACAATTGTGCAACTAGAAAATGAAATCTATCAAATTAAGCAGCAACATG
GAGAGGCAAACAAAGAAAACATCCGGCAAGACTTCTGA

Library Parental gene expression (RPM)
SRP017611_brain 49 .12 RPM
SRP017611_kidney 36 .39 RPM
SRP017611_liver 15 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000012448 ortholog_one2many 1 retrogene
retro_cjac_39,
Cavia porcellus ENSCPOG00000020532 ortholog_one2one 2 retrogenes
retro_cpor_1026, retro_cpor_1085,
Dasypus novemcinctus ENSDNOG00000018484 ortholog_one2one 2 retrogenes
retro_dnov_2350, retro_dnov_2617,
Homo sapiens ENSG00000116752 ortholog_one2one 2 retrogenes
retro_hsap_1220, retro_hsap_427,
Gorilla gorilla ENSGGOG00000028233 ortholog_one2one 2 retrogenes
retro_ggor_417, retro_ggor_949,
Loxodonta africana ENSLAFG00000003183 ortholog_one2many 1 retrogene
retro_lafr_709,
Microcebus murinus ENSMICG00000013720 ortholog_one2one 1 retrogene
retro_mmur_947,
Myotis lucifugus ENSMLUG00000005653 ortholog_one2many 3 retrogenes
retro_mluc_1018, retro_mluc_1609, retro_mluc_2307,
Macaca mulatta ENSMMUG00000014496 ortholog_one2many 1 retrogene
retro_mmul_517,
Nomascus leucogenys ENSNLEG00000004737 ortholog_one2one 2 retrogenes
retro_nleu_1022, retro_nleu_692,
Otolemur garnettii ENSOGAG00000007544 ortholog_one2one 3 retrogenes
retro_ogar_2847, retro_ogar_3226, retro_ogar_692,
Procavia capensis ENSPCAG00000012077 ortholog_one2one 1 retrogene
retro_pcap_31,
Pongo abelii ENSPPYG00000001000 ortholog_one2one 2 retrogenes
retro_pabe_294, retro_pabe_716,
Pan troglodytes ENSPTRG00000001136 ortholog_one2one 3 retrogenes
retro_ptro_325, retro_ptro_557, retro_ptro_835,
Pteropus vampyrus ENSPVAG00000008220 ortholog_one2one 3 retrogenes
retro_pvam_1467, retro_pvam_285, retro_pvam_502,
Rattus norvegicus ENSRNOG00000018783 ortholog_one2one 1 retrogene
retro_rnor_2864,
Sorex araneus ENSSARG00000013847 ortholog_one2one 2 retrogenes
retro_sara_144, retro_sara_180,
Sarcophilus harrisii ENSSHAG00000008467 ortholog_one2one 7 retrogenes
retro_shar_271, retro_shar_289, retro_shar_320, retro_shar_604, retro_shar_722, retro_shar_739, retro_shar_784,
Ictidomys tridecemlineatus ENSSTOG00000014760 ortholog_one2many 1 retrogene
retro_itri_107,
Tupaia belangeri ENSTBEG00000002231 ortholog_one2one 1 retrogene
retro_tbel_1418,
Taeniopygia guttata ENSTGUG00000001012 ortholog_one2one 1 retrogene
retro_tgut_26,
Tarsius syrichta ENSTSYG00000011964 ortholog_one2one 2 retrogenes
retro_tsyr_1678, retro_tsyr_706,
Tursiops truncatus ENSTTRG00000010759 ortholog_one2one 1 retrogene
retro_ttru_199,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1443 76.16 64.89
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2. retro_ocun_1560 69.78 100.00
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Download FASTA sequences of all ENSOCUG00000016784 retrocopies