RetrogeneDB ID: | retro_rnor_41 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:28175207..28175651(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000014123 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ppp1r14b | ||
Ensembl ID: | ENSRNOG00000021151 | ||
Aliases: | Ppp1r14b, PHI-1 | ||
Description: | Protein phosphatase 1 regulatory subunit 14B [Source:UniProtKB/Swiss-Prot;Acc:Q8K3F3] |
Percent Identity: | 75.84 % |
Parental protein coverage: | 99.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADSGPAGGAALAAPAPGPGSGSTGPRVYFQSPPGAAGEGPGG---ADDDGPVRRQGKVTVKYDRKELRK |
M.DS.PAGG.ALA.P.PG....STG.RVYFQS.P...GE.PG.....D.D.PVRR.GK..VKY.RKELRK | |
Retrocopy | MSDSDPAGGPALADPGPG---ASTGHRVYFQSSPETIGETPGSDNKPDEDEPVRRPGKTVVKYNRKELRK |
Parental | RLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDTRAARVKELLVDCYKPTEAFISGLLDKIRG |
RL.L.EWILEQLT.LYDC.EEEIPELEIDVDELLDMESDDTRAARVKELLVDCYKPTE.FI..LLDKIRG | |
Retrocopy | RLKLDEWILEQLTGLYDCKEEEIPELEIDVDELLDMESDDTRAARVKELLVDCYKPTETFINDLLDKIRG |
Parental | MQKLSTPQK |
MQKL..P.K | |
Retrocopy | MQKLTIPLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .03 RPM |
SRP017611_liver | 0 .00 RPM | 8 .54 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_30 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018019 | 1 retrocopy | |
Felis catus | ENSFCAG00000030667 | 1 retrocopy | |
Mus musculus | ENSMUSG00000056612 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000030926 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000017120 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000020676 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021151 | 2 retrocopies |
retro_rnor_1262, retro_rnor_41 ,
|