RetrogeneDB ID: | retro_sara_105 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_3108:2323..2701(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2L3 | ||
Ensembl ID: | ENSSARG00000005137 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2L 3 [Source:HGNC Symbol;Acc:12488] |
Percent Identity: | 85.27 % |
Parental protein coverage: | 88.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNI |
ELEEIR.CGMKNF....V.EANLLTWQ.LIVPDNPPYDKGAFR..INFPAEYPFKPP.ITF...IYHP.I | |
Retrocopy | ELEEIRQCGMKNFH---VAEANLLTWQELIVPDNPPYDKGAFRV*INFPAEYPFKPPEITFXXXIYHPDI |
Parental | DEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCK |
DEKGQVCLPVISAENWKPATKTDQVI.SLIALVNDP.PEHPL.ADLAEEYSKD.KKF.K | |
Retrocopy | DEKGQVCLPVISAENWKPATKTDQVIPSLIALVNDPPPEHPLWADLAEEYSKDCKKFYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000019274 | 1 retrocopy | |
Homo sapiens | ENSG00000185651 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000001547 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000192 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002610 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000011602 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014114 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013575 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005137 | 3 retrocopies |
retro_sara_105 , retro_sara_277, retro_sara_653,
|
Ictidomys tridecemlineatus | ENSSTOG00000016293 | 2 retrocopies | |
Tetraodon nigroviridis | ENSTNIG00000010600 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000003392 | 1 retrocopy |