RetrogeneDB ID: | retro_ocun_932 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:15713904..15714363(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000025662 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2L3 | ||
Ensembl ID: | ENSOCUG00000002610 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2L 3 [Source:HGNC Symbol;Acc:12488] |
Percent Identity: | 96.15 % |
Parental protein coverage: | 99.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AASRRAPLNQQELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKI |
AASRR......ELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKI | |
Retrocopy | AASRRL---MKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKI |
Parental | TFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCK |
TFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCK | |
Retrocopy | TFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCK |
Parental | NAEEFTKKYGEKRPVD |
NAEEFTKKYGEKRPVD | |
Retrocopy | NAEEFTKKYGEKRPVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .04 RPM | 1 .05 RPM |
SRP017611_kidney | 2 .43 RPM | 1 .52 RPM |
SRP017611_liver | 1 .46 RPM | 0 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000019274 | 1 retrocopy | |
Homo sapiens | ENSG00000185651 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000001547 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000192 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002610 | 3 retrocopies |
retro_ocun_826, retro_ocun_932 , retro_ocun_937,
|
Oryctolagus cuniculus | ENSOCUG00000006026 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008900 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000029448 | 10 retrocopies | |
Pongo abelii | ENSPPYG00000011602 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014114 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013575 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005137 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000016293 | 2 retrocopies | |
Tetraodon nigroviridis | ENSTNIG00000010600 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000003392 | 1 retrocopy |