RetrogeneDB ID: | retro_sara_167 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_5495:92476..92837(-) | ||
Located in intron of: | ENSSARG00000005970 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX20 | ||
Ensembl ID: | ENSSARG00000004625 | ||
Aliases: | None | ||
Description: | COX20 cytochrome C oxidase assembly factor [Source:HGNC Symbol;Acc:26970] |
Percent Identity: | 72.36 % |
Parental protein coverage: | 99.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAAAQEPGEPGKGKPFKLLGILDVENTPCARDSLLYGSLGSVVTGLGHFLLTSRIKRSCDIGLGGFILVT |
MA..QE.G..GKG.PFK.LGILD.ENTPCA.DSLLYGSL..VV..LGHFLLT.RIKR.CD.GLGGF.LVT | |
Retrocopy | MAGEQELGKSGKGNPFKSLGILDIENTPCAWDSLLYGSLRCVVASLGHFLLTNRIKR*CDVGLGGFTLVT |
Parental | LGCWFHCRY-NYGKQKIQ-ERIAREGIK-KKILYESTHLDPERKPTDKNSSSK |
LGCWFH.R..NY.KQ.IQ.E.I.REG.K...ILYE.THLDPERK...K.SSSK | |
Retrocopy | LGCWFHSRWNNYAKQRIQ<EIISREGTK<NRILYERTHLDPERKSNYKTSSSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001381 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000012147 | 1 retrocopy | |
Homo sapiens | ENSG00000203667 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000026132 | 7 retrocopies | |
Monodelphis domestica | ENSMODG00000024669 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026500 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004027 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004534 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000000053 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002577 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004553 | 2 retrocopies | |
Sorex araneus | ENSSARG00000004625 | 2 retrocopies |
retro_sara_167 , retro_sara_470,
|
Tupaia belangeri | ENSTBEG00000015272 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000005644 | 1 retrocopy |